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Genotypes are produced for non-Paratyphi genomes #3

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AntonS-bio opened this issue Mar 21, 2024 · 0 comments
Open

Genotypes are produced for non-Paratyphi genomes #3

AntonS-bio opened this issue Mar 21, 2024 · 0 comments

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@AntonS-bio
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Hi,

I've noticed that Paratype tends to report genotypes for non-Paratyphi assemblies (using Fasta mode). For example, GCF_000240185.1 (K. pneumoniae) if classified as GT 2.4.8, GCA_007910265.1 (which I think is Paratyphi C) is comes out as 2.3.1. I see that some assemblies are rejected as non-Typhi and no genotypes are produced, but perhaps there should be a more strict discrimination between Para A and other genomes?

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