Merge pull request #4 from dabail10/master

Added machine support for NCAR's cheyenne machine.

configuration/scripts/cice.run.setup.csh

@@ -45,6 +45,20 @@ cat >> ${jobfile} << EOFB
 #BSUB -P ${acct}
 EOFB
 
+#==========================================
+
+elseif (${CICE_MACHINE} =~ cheyenne*) then
+cat >> ${jobfile} << EOFB
+#PBS -j oe 
+#PBS -m ae 
+#PBS -V
+#PBS -q regular
+#PBS -N ${CICE_CASENAME}
+#PBS -A ${CICE_ACCT}
+#PBS -l select=${nnodes}:ncpus=${ntasks}:mpiprocs=${ntasks}
+#PBS -l walltime=02:00:00
+EOFB
+
 else if (${CICE_MACHINE} =~ thunder* || ${CICE_MACHINE} =~ gordon* || ${CICE_MACHINE} =~ conrad*) then
 cat >> ${jobfile} << EOFB
 #PBS -N ${CICE_CASENAME}
@@ -145,6 +159,11 @@ setenv MP_TASK_AFFINITY core:\${OMP_NUM_THREADS}
 mpirun.lsf ./cice >&! \$CICE_RUNLOG_FILE
 EOFR
 
+elseif (${CICE_MACHINE} =~ cheyenne*) then
+cat >> ${jobfile} << EOFR
+mpiexec_mpt -n ${ntasks} ./cice >&! \$CICE_RUNLOG_FILE
+EOFR
+
 else if (${CICE_MACHINE} =~ thunder*) then
 cat >> ${jobfile} << EOFR
 mpiexec_mpt -np ${ntasks} omplace ./cice >&! \$CICE_RUNLOG_FILE

configuration/scripts/machines/Macros.cheyenne

@@ -0,0 +1,67 @@
+#==============================================================================
+# Makefile macros for "yellowstone" an NCAR Linux Cluster
+#==============================================================================
+# For use with intel compiler
+#==============================================================================
+
+CPP        := fpp
+CPPDEFS    := -DFORTRANUNDERSCORE -DNO_R16 -DHAVE_F2008_CONTIGUOUS -DLINUX -DCPRINTEL ${CICE_CPPDEFS}
+CFLAGS     := -c -O2 -fp-model precise   -xHost
+
+FIXEDFLAGS := -132
+FREEFLAGS  := -FR
+FFLAGS     := -O2 -fp-model precise -convert big_endian -assume byterecl -ftz -traceback   -xHost
+FFLAGS_NOOPT:= -O0
+
+ifeq ($(CICE_COMMDIR), mpi)
+  FC         := mpif90
+else
+  FC         := ifort
+endif
+
+MPICC:= mpicc
+
+MPIFC:= mpif90
+LD:= $(MPIFC)
+
+NETCDF_PATH := $(NETCDF)
+
+PIO_CONFIG_OPTS:= --enable-filesystem-hints=gpfs 
+
+#PNETCDF_PATH := $(PNETCDF)
+PNETCDF_PATH := /glade/u/apps/ch/opt/pio/2.2/mpt/2.15f/intel/17.0.1/lib
+
+INCLDIR := $(INCLDIR)
+
+LIB_NETCDF := $(NETCDF_PATH)/lib
+LIB_PNETCDF := $(PNETCDF_PATH)/lib
+LIB_MPI := $(IMPILIBDIR)
+
+SLIBS   := -L$(LIB_NETCDF) -lnetcdf -lnetcdff -L$(LIB_PNETCDF) -lpnetcdf -lgptl
+
+SCC:= icc 
+
+SFC:= ifort 
+
+ifeq ($(compile_threaded), true) 
+   LDFLAGS += -openmp 
+   CFLAGS += -openmp 
+   FFLAGS += -openmp 
+endif
+
+ifeq ($(DITTO), yes)
+   CPPDEFS :=  $(CPPDEFS) -DREPRODUCIBLE
+endif
+
+### if using parallel I/O, load all 3 libraries.  PIO must be first!
+ifeq ($(IO_TYPE), pio)
+   PIO_PATH:=/glade/u/apps/ch/opt/pio/2.2/mpt/2.15f/intel/17.0.1/lib
+   INCLDIR += -I/glade/u/apps/ch/opt/pio/2.2/mpt/2.15f/intel/17.0.1/include
+   SLIBS   := $(SLIBS) -L$(PIO_PATH) -lpiof
+
+   CPPDEFS :=  $(CPPDEFS) -Dncdf
+endif
+
+ifeq ($(IO_TYPE), netcdf)
+   CPPDEFS :=  $(CPPDEFS) -Dncdf
+endif

configuration/scripts/machines/env.cheyenne

@@ -0,0 +1,23 @@
+#!/bin/csh -f
+
+source /glade/u/apps/ch/opt/lmod/7.2.1/lmod/7.2.1/init/csh
+
+module purge
+module load ncarenv/1.1
+module load intel/17.0.1
+module load mpt/2.15f
+module load ncarcompilers/0.4.1
+module load pio/2.2.0
+
+setenv CICE_MACHINE_ENVNAME cheyenne
+setenv CICE_MACHINE_WKDIR /glade/scratch/$user/CICE_RUNS
+setenv CICE_MACHINE_INPUTDATA /glade/p/work/dbailey/atm/gx3v2m/NCAR_bulk
+setenv CICE_MACHINE_SUBMIT "qsub"
+setenv CICE_MACHINE_TPNODE 36
+setenv CICE_MACHINE_ACCT P0000000
+setenv CICE_MACHINE_BLDTHRDS 1
+
+if (-e ~/.cice_proj) then
+   set account_name = `head -1 ~/.cice_proj`
+   setenv CICE_ACCT ${account_name}
+endif