release 4.4.0

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                Date:   Tue May 2 14:43:44 2023 -0300

                    Add mLIQSS methods to engine.

                commit 7a5c66c62e4ba6ec9a0faffa4d4a1ebf198d064e
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Tue May 2 14:42:20 2023 -0300

                    Remove qss test methods from engine.

            commit 6441618b505a6619260c40042e456f61557f8d1f
            Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
            Date:   Thu Jun 1 11:27:15 2023 -0300

                [iss-227]
                Squashed commit of the following:

                commit b6edf175bc4c85964def7fd5f91fa71e1ffab6f5
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Jun 1 11:08:33 2023 -0300

                    Remove working tests from test-suite.

                commit 53548f973b22ebefb9a70f92310f8d3d4c0865f1
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Jun 1 11:06:39 2023 -0300

                    Added new system tests for mmoc.

                commit 8fefb8cd5233493e408251ec301ee24eb405a8fc
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Jun 1 11:06:03 2023 -0300

                    Added new system tests GT files for mmoc.

                commit 21bfee71c5866a680442b0a9640858af88502836
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Jun 1 11:03:37 2023 -0300

                    Added new tests for engine.

                commit 4437b4281fa5ceedf5b285850bcaec1811573fdb
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Jun 1 11:02:53 2023 -0300

                    Added new engine system tests.

            commit 8821b3517aaef28eb8e571a9325022d43f5071f4
            Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
            Date:   Thu Jun 1 10:30:09 2023 -0300

                [iss-216]
                Squashed commit of the following:

                commit ec26afbdd4f6ca622e9a5c00587f103a6c3a92cb
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Jun 1 10:11:11 2023 -0300

                    Updated interlkeaved engine GT files.

                commit 9d5f46237f0d0da2a40c12bd4f88d847adab4a0b
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Wed May 31 15:57:26 2023 -0300

                    Added VIRplanoS system test.

                commit 6daa8bdb797cae7e37953ba668633440ca276104
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Wed May 31 15:57:09 2023 -0300

                    Updated GT test files.

                commit d522b80f4c72651d4981c6cc34f2dd2e4080c9b6
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Wed May 31 15:56:45 2023 -0300

                    Added VIRplanoS gt files.

                commit fad4bcb7758d16943bc89a3823c91e9dfcb4ed37
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Wed May 31 15:56:19 2023 -0300

                    Fixed pure recursive algebraic code generation in jacobian matrix.

                commit 24d0b49cf06a1aee7f71e84922fd0465ff501dd8
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Wed May 31 15:51:12 2023 -0300

                    Fixed code generation for pure recursive algebraics in Jacobian.

                commit a87395ce2e04446f51721fab0496351141da9b9d
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Wed May 31 15:44:44 2023 -0300

                    Fixed pure algebraic recursive dependencies.

                commit 8bf02a8773e4fcb4ccbaa1e8232dfd98d7b0da3d
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Wed May 31 15:43:52 2023 -0300

                    Updated vscode config files.

                commit f464cddc8bd72c92b055150ae1ce09dfb44d9493
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Wed May 31 15:43:27 2023 -0300

                    Fix error line number on partialevalexp.

                commit 73e8f60d60258a62cb886c61f99efc7d7bdc21b3
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Wed May 31 15:42:51 2023 -0300

                    Updated function printer beginExpression.

                commit 3910f0905d27a9c7f37d72f82311f06d5b1ac735
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Wed May 31 15:42:24 2023 -0300

                    Added update method with other from other range init values.

                commit 7ab2231876ebaf48bfd5f94c9d8e5ba695be480f
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Wed May 31 15:41:48 2023 -0300

                    Modified header includes.

                commit 3c263405cecea07c1301fa36c6c3dcde113fd1e7
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Mon May 8 17:23:20 2023 -0300

                    Added launch for engine.

                commit 310522e8b96d27c4a14c6db135b8d5e1f75dcc42
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Mon May 8 17:23:07 2023 -0300

                    Added new launch test.

                commit b8d3c04ecf99ebfbd46135759eafbef2a2159ccd
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Mon May 8 17:22:42 2023 -0300

                    Fixed error lines.

                commit e7caeef8e3cf76960b403f560f7e4abf6c8db72b
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Mon May 8 17:22:29 2023 -0300

                    Fixed matrix block indent.

                commit 6fa26ad7a595eca85632f077f0d8055a774c077f
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Mon May 8 17:21:34 2023 -0300

                    Check for G range in Jacobian.

                commit b41d97f28acb4a307333ce0a2733cbb0af7acebe
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Mon May 8 17:21:09 2023 -0300

                    Fixed log file and use Integer instead of Real for ranges.

                commit 0fb2c48f37d9df4b8ef42cc497f567aae9566c33
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Mon May 8 17:20:33 2023 -0300

                    Fixed compDef comparison.

                commit 3c697f53f00f4e069129617fae6d3d1515f4dc89
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Mon May 8 17:20:08 2023 -0300

                    Added apliedInitValues methods.

                commit 83dd66c2205d0cd0934d0aee6e617c61447610d9
                Merge: 554ab9f 9bb5bcc
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Tue May 2 17:18:15 2023 -0300

                    Merge branch 'qss-solver-dev' into mmoc/iss-216-add-code-generation-for-pure-recursive-deps

                commit 554ab9f7e7c94d696877f13dfdf149fb836fca73
                Merge: c6dc317 d33f130
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Tue May 2 17:10:34 2023 -0300

                    Merge branch 'qss-solver-dev' into mmoc/iss-216-add-code-generation-for-pure-recursive-deps

                commit c6dc317d3aaa3dc40eca74a28b7854e0b1a94798
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Fri Apr 21 10:30:00 2023 -0300

                    Added value method to tables.

                commit 2f1c2829bdec82dad134f9112878ea10b881dfce
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Fri Apr 21 10:29:41 2023 -0300

                    Check purely recursive deps in Jacobian.

                commit 9f60aef0a72225e1162b6bbe24bec357698c2b44
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Fri Apr 21 10:29:18 2023 -0300

                    Check pure recursive deps in matrix generator.

                commit 60da967617c973ef4ddfeed7f3211f414abfc8a6
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Fri Apr 21 10:28:54 2023 -0300

                    Check purely recursive deps in model deps.

                commit be1e5da65c12cbecb07c0996103a3a4888371886
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Fri Apr 21 10:28:33 2023 -0300

                    Check recursive deps in model definition.

                commit 8a8b253125e58ddd05b4d14ce37e642b4b24065e
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Fri Apr 21 10:27:42 2023 -0300

                    Check range variables in indexes.

                commit e421afbbcbd85e04d1fb2d20f8b07ed07fa7b787
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Fri Apr 21 10:27:11 2023 -0300

                    Check alg recursive deps.

                commit a91aa00fd02db477d44702fec3534f76e72e0cf7
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Fri Apr 21 10:26:04 2023 -0300

                    Compute purely recursive deps.

                commit a4cc95c5078e20fdd07900eeac971e5d7e85121f
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 14:16:59 2023 -0300

                    Add pure recursive deps to VariableDep definition.

            commit 9bb5bccc3e73f7ff87b5d10d28e1d0c965b607c1
            Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
            Date:   Tue May 2 17:17:37 2023 -0300

                [iss-218]
                Squashed commit of the following:

                commit 9e184801496337e0d7fd23225ae2e5afe6f1daaa
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 14:14:06 2023 -0300

                    Set utils variable error as fatal.

                commit 0a937764f2c02b7fd266641c734df2b770455e9d
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 14:13:33 2023 -0300

                    Add terminte as a built in variable.

            commit d33f13003742f45688a9a481cd7b4814b5f24ac9
            Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
            Date:   Wed Apr 26 10:25:02 2023 -0300

                [iss-221]
                Squashed commit of the following:

                commit 114b09a3749dae03b87933781bea1463975323e3
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Tue Apr 25 14:12:11 2023 -0300

                    Move QSS_TEST method to the end of the Solver enum.

                commit 1b50762fd09a4a40c1224e8bf1b9cc9fd57eba98
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 10:46:13 2023 -0300

                    Add qss test method to quantizer.

                commit 3323d731d9d352b9fb453a882635704a535167b6
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 10:45:57 2023 -0300

                    Add qss test method.

                commit 34d36d6d4a090a6a9688395b85ef8f8c498cbe98
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 10:45:32 2023 -0300

                    Parse qss test methods in settings.

                commit 5395fcfdf1f631940b7ea0c5eca6efa8ebb18f9d
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 10:45:15 2023 -0300

                    Add qss test methods to data enum.

            commit f897250a344c64dd6022446ecfa5ae2cc8789af1
            Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
            Date:   Wed Apr 26 10:24:28 2023 -0300

                [iss-222]
                Squashed commit of the following:

                commit a1e54cbf2d9a4427d433a1953b86c0ec75bb26e8
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Tue Apr 25 14:24:06 2023 -0300

                    Move QSS_TEST method to the end of Solver enum.

                commit a11aef4e5631c12698e68ee1afc940cc660cb1c5
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Tue Apr 25 14:23:27 2023 -0300

                    Revert "Updated system tests GT files."

                    This reverts commit 34962906de2ff438fee7e339ac490066deec3d34.

                commit 34962906de2ff438fee7e339ac490066deec3d34
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Tue Apr 25 11:49:21 2023 -0300

                    Updated system tests GT files.

                commit 45f7f4db2f921282cb5b53c41579891a1f41583b
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 10:47:40 2023 -0300

                    Add qss test method to annotations.

            commit 9eafe4be92cab937161e2d70001c3226a9ebbd8d
            Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
            Date:   Wed Apr 26 10:23:47 2023 -0300

                [iss-223]
                Squashed commit of the following:

                commit dbdf7e6a2e546724c5bc161bef9db6f274fe5320
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Tue Apr 25 15:22:43 2023 -0300

                    Allow test methods selection with checkbox.

                commit e603feefe3a78d73db0f897194800b1e4aa4ac87
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 10:50:19 2023 -0300

                    Add qss test method to form.

                commit 9898e87f4e20c47ce848617a040a21156b003c5d
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 10:49:58 2023 -0300

                    Highlight qss test method.

                commit 704d6d24accbfed365eba29cbff7342dce90521a
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 10:49:42 2023 -0300

                    Parse qss test method in runform.

            commit b21f9b282b141059d5e332bcd4b55bd68863ab39
            Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
            Date:   Tue Apr 25 14:32:23 2023 -0300

                [iss-217]
                Squashed commit of the following:

                commit f662e4df4ad5bf3cd08985670c0e60b44e93ec4b
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Tue Apr 25 13:37:21 2023 -0300

                    Update ast equation builder.

                commit b3c52516bd979c8ced2f3ed548e5fb221aa2d6dc
                Merge: 77820f4 935c8fc
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Tue Apr 25 13:21:03 2023 -0300

                    Merge branch 'qss-solver-dev' into mmoc/iss-217-adapt-reinit-statements-to-equation-sections

                commit 77820f496d03057d3e1acf26ab885084cdb615cc
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 14:27:47 2023 -0300

                    Modified when equation constructor.

                commit b2c6bf7d768e103b1957a527f6bf2760eb8170ad
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 14:27:20 2023 -0300

                    Parse when equations comment.

                commit eb078a3b66dd1909c9136963a7a79a61f50f6856
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 14:27:01 2023 -0300

                    Added commento to ast equations.

                commit d126bac6db544bebe03236278795d1ea15c1b777
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 14:26:02 2023 -0300

                    Added methods to parse when equations and transform them into when statements.

                commit f6c27c6b47f05c4f9c598f58f8e6812aaf14a3c2
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 14:22:09 2023 -0300

                    Allow when equations in model checker.

            commit 935c8fc7599d7ea2d9888e2a78257c25ae7ce15a
            Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
            Date:   Tue Apr 25 11:29:05 2023 -0300

                [iss-219]
                Squashed commit of the following:

                commit dfc534e20230c8815d918353e6b676f13524a4fb
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Mon Apr 24 16:18:38 2023 -0300

                    Update mmoc system tests GT files.

                commit 24ddc5142f5d4458c7ff337f49fdb839653ed273
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Fri Apr 21 09:53:56 2023 -0300

                    Clean algebraic vectors and use discretes in DH matrix.

                commit 9e6aee4d0b93158e212252154de3833e547b2773
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Fri Apr 21 09:52:48 2023 -0300

                    Use algebraic variables instead of states in jacobian generation.

            commit 8a2bbb4f6655e2365b118922da46f0099246bd64
            Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
            Date:   Tue Apr 25 11:26:48 2023 -0300

                [iss-193]
                Squashed commit of the following:

                commit 4ad846f01efc456adaf1fd7e2c0977e236b20900
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Tue Apr 25 10:28:21 2023 -0300

                    Fix merge graph expression maps generator.

                commit c4892b7bfb7f246f40692b6524244b10995f5f75
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 11:55:34 2023 -0300

                    Pad dims in merge graph builder for expressions with different usages.

                commit 206fdc70bf4eacc4ed9035088c3bb57aa4d61278
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 11:54:41 2023 -0300

                    Added padDim method to lamp_exp.

            commit dce9d5e5fa92f8c70bcde6d3de98b692eee8529c
            Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
            Date:   Mon Apr 24 16:19:22 2023 -0300

                [iss-211]
                Squashed commit of the following:

                commit b08d6e96471a49420043a07379c6707edc65beb3
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Mon Apr 24 15:18:42 2023 -0300

                    Updated mmoc tests GT files.

                commit ea88f01480dee0ab330f2c7ad32838d1ed4dfe80
                Merge: c76b250 5c74c62
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 12:17:33 2023 -0300

                    Merge branch 'qss-solver-dev' into mmoc/iss-211-fix-double-expression-printer-in-integer-divisions

                commit c76b2501e371c9b5219a475856a96b8fc0cb537f
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 11:48:16 2023 -0300

                    Check for interger divisions and cast them to double in printer.

                commit 4fa29dfc2e5baae0cfe2eaacfc86543088838584
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 11:47:23 2023 -0300

                    Check for constant integer expressions in visitor.

            commit 76089590e6f3c17296e4d5fc3831e775eaa9b726
            Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
            Date:   Fri Apr 21 09:47:26 2023 -0300

                [iss-215]
                Squashed commit of the following:

                commit 98b5207c1a60e0ccefe38127e0e1641b53318426
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 17:43:31 2023 -0300

                    Added algebraic number access methods to model config.

                commit c717271cc69e33ae52f8e99e4c2574f4a6a556c4
                Author: joaquin.f.fernandez <joaquin.f.fernandez@gmail.com>
                Date:   Thu Apr 20 11:45:05 2023 -0300

                    Use internal event offset in zero crossings.

                commit 1f26affb89d1cc7d0ce85993ee12618badc8c8e9
                Author: joaquin.f.fernandez <joa…

.github/workflows/c-cpp.yml

@@ -46,10 +46,11 @@ jobs:
         sudo apt-get install pkgconf
         sudo apt-get install python
         sudo apt-get install qt5-default
+        sudo apt-get install rapidjson-dev
           
     - name: Build
       working-directory: ./src
-      run: make
+      run: make repo_checkout=https
 
     - name: Install
       working-directory: ./src

.hooks/pre-commit

@@ -7,13 +7,13 @@ def get_files():
                                     '--name-only', 'HEAD']).split()
 
 def apply_code_style():
-    files = filter(lambda x: x.find('tests/system/gt_data') == -1, get_files())
+    files = filter(lambda x: x.find(b'tests/system/gt_data') == -1, get_files())
 
-    files = filter(lambda x: x.endswith('.c') or
-                             x.endswith('.h') or
-                             x.endswith('.cpp'), files)
+    files = filter(lambda x: x.endswith(b'.c') or
+                             x.endswith(b'.h') or
+                             x.endswith(b'.cpp'), files)
     for f in files:
-      print("Apply code style to: " + f)
+      print("Apply code style to: " + str(f))
       subprocess.check_output(['clang-format-7', '-i', f])
       subprocess.check_output(['git', 'add', f])
 

.vscode/settings.json

@@ -0,0 +1,8 @@
+{
+    "sonarlint.pathToCompileCommands": "${workspaceFolder}/src/engine/compile_commands.json",
+    "files.associations": {
+        "patoh.h": "c",
+        "scotch.h": "c",
+        "utils.h": "c"
+    }
+}

CHANGELOG

@@ -1,5 +1,16 @@
 ## Changelog
 
+## [4.4.0] - 28-08-2024
+
+### Added
+- **Allow discrete Integer** definitions to be able to use them as array indexes.
+- **New MMO_CVODEMaxOder annotation** to select the max order used in `CVODE` solver.
+- **New MMO_XOutput annotation** that allows selecting state variable output (exerimental).
+
+### Changed
+- Use time variable in initial code.
+- Fixed QSS first order method recompute next time.
+
 ## [4.3.0] - 21-09-2022
 
 ### Added

README.md

@@ -1,4 +1,4 @@
-## QSS Solver 4.3.0
+## QSS Solver 4.4.0
 
 The QSS Solver is a modeling and simulation environment for 
 continuous and hybrid systems and it's optimized for large scale model simulation.
@@ -219,6 +219,17 @@ The makefile script accepts the following targets:
 
 ## Changelog
 
+## [4.4.0] - 28-08-2024
+
+### Added
+- **Allow discrete Integer** definitions to be able to use them as array indexes.
+- **New MMO_CVODEMaxOder annotation** to select the max order used in `CVODE` solver.
+- **New MMO_XOutput annotation** that allows selecting state variable output (exerimental).
+
+### Changed
+- Use time variable in initial code.
+- Fixed QSS first order method recompute next time.
+
 ## [4.3.0] - 21-09-2022
 
 ### Added
@@ -230,14 +241,6 @@ The makefile script accepts the following targets:
 ### Removed
 - **mLIQSS3** is deprecated.
 
-## [4.2.1] - 28-06-2023
-
-### Added
-- Added mLIQSS article models to distribution.
-
-### Changed
-- Fix mLIQSS recompute next time to only update the Jacobian approximation when the influencer is a state variable.
-
 ## Licensing
 
 Please see the file called LICENSE.

bin/build.sh

@@ -15,7 +15,7 @@
 #         NOTES: ---
 #        AUTHOR: Joaquin Fernandez, joaquin.f.fernandez@gmail.com
 #       PROJECT: QSS Solver
-#       VERSION: 4.3.0
+#       VERSION: 4.4.0
 #===================================================================================
 
 FILE=$1

bin/compile.sh

@@ -18,7 +18,7 @@
 #         NOTES: ---
 #        AUTHOR: Joaquin Fernandez, joaquin.f.fernandez@gmail.com
 #       PROJECT: QSS Solver
-#       VERSION: 4.3.0
+#       VERSION: 4.4.0
 #===================================================================================
 
 FILE=$1

bin/createLog.sh

@@ -14,7 +14,7 @@
 #         NOTES: --- 
 #        AUTHOR: Joaquin Fernandez, joaquin.f.fernandez@gmail.com
 #       PROJECT: QSS Solver
-#       VERSION: 4.3.0
+#       VERSION: 4.4.0
 #===================================================================================
 
 MODEL=$1

bin/exportvars.sh

@@ -14,7 +14,7 @@
 #         NOTES: ---
 #        AUTHOR: Joaquin Fernandez, joaquin.f.fernandez@gmail.com
 #       PROJECT: QSS Solver
-#       VERSION: 4.3.0
+#       VERSION: 4.4.0
 #===================================================================================
 
 cd ..

bin/gnuplot.sh

@@ -13,7 +13,7 @@
 #         NOTES: -persist is the default option used by the QSS Solver GUI.
 #        AUTHOR: Joaquin Fernandez, joaquin.f.fernandez@gmail.com
 #       PROJECT: QSS Solver
-#       VERSION: 4.3.0
+#       VERSION: 4.4.0
 #===================================================================================
 
 OPTIONS=$1

bin/mmoc.sh

@@ -14,7 +14,7 @@
 #         NOTES: --- 
 #        AUTHOR: Joaquin Fernandez, joaquin.f.fernandez@gmail.com
 #       PROJECT: QSS Solver
-#       VERSION: 4.3.0
+#       VERSION: 4.4.0
 #===================================================================================
 
 OPTIONS=$1

bin/registervars.sh

@@ -14,7 +14,7 @@
 #         NOTES: ---
 #        AUTHOR: Joaquin Fernandez, joaquin.f.fernandez@gmail.com
 #       PROJECT: QSS Solver
-#       VERSION: 4.3.0
+#       VERSION: 4.4.0
 #===================================================================================
 
 cd ..

bin/run.sh

@@ -17,7 +17,7 @@
 #         NOTES: ---
 #        AUTHOR: Joaquin Fernandez, joaquin.f.fernandez@gmail.com
 #       PROJECT: QSS Solver
-#       VERSION: 4.3.0
+#       VERSION: 4.4.0
 #===================================================================================
 
 

bin/runqss.sh

@@ -16,7 +16,7 @@
 #         NOTES: ---
 #        AUTHOR: Joaquin Fernandez, joaquin.f.fernandez@gmail.com
 #       PROJECT: QSS Solver
-#       VERSION: 4.3.0
+#       VERSION: 4.4.0
 #===================================================================================
 
 FILE=$1

bin/sbml.sh

@@ -16,7 +16,7 @@
 #         NOTES: --- 
 #        AUTHOR: Joaquin Fernandez, joaquin.f.fernandez@gmail.com
 #       PROJECT: QSS Solver
-#       VERSION: 4.3.0
+#       VERSION: 4.4.0
 #===================================================================================
 
 OPTIONS=$1

bin/simulate.sh

@@ -20,7 +20,7 @@
 #         NOTES: ---
 #        AUTHOR: Joaquin Fernandez, joaquin.f.fernandez@gmail.com
 #       PROJECT: QSS Solver
-#       VERSION: 4.3.0
+#       VERSION: 4.4.0
 #===================================================================================
 
 FILE=$1

bin/sortDiscretes.sh

@@ -15,7 +15,7 @@
 #         NOTES: ---
 #        AUTHOR: Joaquin Fernandez, joaquin.f.fernandez@gmail.com
 #       PROJECT: QSS Solver
-#       VERSION: 4.3.0
+#       VERSION: 4.4.0
 #===================================================================================
 
 if test -n "$(find . -maxdepth 1 -name '*-discrete-*.dat' -print -quit)"; then

bin/uploadDoc.sh

@@ -13,7 +13,7 @@
 #         NOTES: ---
 #        AUTHOR: Joaquin Fernandez, joaquin.f.fernandez@gmail.com
 #       PROJECT: QSS Solver
-#       VERSION: 4.3.0
+#       VERSION: 4.4.0
 #===================================================================================
 
 cd $MMOC_SRC/engine/usr/doc/html

deploy/linux/README.md

@@ -0,0 +1,14 @@
+**Release procedure**
+
+- Checkout `qss-solver-release` branch.
+- Create branch `release-X.X.X`.
+- Merge `qss-solver-dev` -> `qss-solver-release`.
+- Update `version` file to `X.X.X`.
+- Run `update.sh`.
+- Commit update changes with `-n`.
+- Update `CHANGELOG` and `README.md` files.
+- Commit changes with `-n`.
+- Push branch.
+- Merge pushed branch in `qss-solver-release` with `--squash`.
+- Push `qss-solver-release` branch.
+- Merge `qss-solver-release` in `qss-solver-dev`.

deploy/linux/build.sh

@@ -15,7 +15,7 @@
 #         NOTES: --- 
 #        AUTHOR: Joaquin Fernandez, joaquin.f.fernandez@gmail.com
 #       PROJECT: QSS Solver
-#       VERSION: 4.3.0
+#       VERSION: 4.4.0
 #===================================================================================
 
 rm -rf qss-solver-*.deb
@@ -35,16 +35,24 @@ echo $INI_VER >> ./deploy/linux/qss-solver.ini
 # Set OS config files.
 CONTROL_FILE="control.amd64"
 SBML_LIB="libsbml.so.5.18.0"
-PACKAGE_NAME=qss-solver-$VER.deb
+PACKAGE_NAME=qss-solver-$VER
 SYSTEM_VERSION=`lsb_release -d`
 if [[ "$SYSTEM_VERSION" == *"22.04"* ]]; then
   CONTROL_FILE="control.amd64.u22"
   SBML_LIB="libsbml.so.5.19.0"
-  PACKAGE_NAME=qss-solver-$VER-u22.deb
+  PACKAGE_NAME=$PACKAGE_NAME-u22
 fi
 
 # Set solver branch
 BRANCH=`git rev-parse --abbrev-ref HEAD`
+
+# If build from development branch, update package name to unstable.
+if [ "$BRANCH" == "qss-solver-dev" ]; then
+  PACKAGE_NAME=$PACKAGE_NAME-unstable
+fi
+
+PACKAGE_NAME=$PACKAGE_NAME.deb
+
 BRANCH="branch="$BRANCH 
 echo $BRANCH >> ./deploy/linux/qss-solver.ini
 

deploy/linux/version

@@ -1 +1 @@
-4.3.0
+4.4.0

src/Makefile

@@ -1,6 +1,9 @@
 # Target variables
 MODE ?= Debug
 DISTRO := $(shell lsb_release -r 2>/dev/null | grep Release | awk '{ print $$2 }')
+sbg_branch ?= sb-graph-dev
+build_sbg ?= True
+repo_checkout ?= ssh
 
 # Build cores.
 CORES = $(shell nproc)
@@ -18,7 +21,7 @@ mmo-interfaces: create-folders
 	@cd interfaces/sbml &&  $(MAKE) MODE=$(MODE) -j $(CORES)
 	@echo Done
 
-qss-engine: create-folders
+qss-engine: create-folders  lib-gtest
 	@echo BUILDING QSS LIBRARIES DEPS
 	@cd engine && $(MAKE) cvode
 	@cd engine && $(MAKE) ida
@@ -36,11 +39,14 @@ qss-user-libs: create-folders qss-engine
 	@echo Done
 
 mmo-compiler: create-folders lib-gtest  
+	@echo BUILDING MICROMODELICA C COMPILER DEPS
+	@cd mmoc && $(MAKE) MODE=$(MODE) lib_sbg sbg_branch=$(sbg_branch) build_sbg=$(build_sbg) repo_checkout=$(repo_checkout)
+	@echo Done
 	@echo BUILDING MICROMODELICA C COMPILER
 	@cd mmoc && $(MAKE) MODE=$(MODE) -j $(CORES) 
 	@echo Done
 
-qss-solver-gui: create-folders 
+qss-solver-gui: create-folders lib-gtest
 	@echo BUILDING MMO EDITOR
 	@cd gui && $(MAKE) -f gui.makefile MODE=$(MODE) -j $(CORES)     
 	@echo Done
@@ -99,7 +105,10 @@ clean:
 	@cd interfaces/sbml && $(MAKE) clean     
 
 help:
-	@echo "make MODE=<Debug|Release> "
+	@echo "make MODE=<Debug|Release> sbg_branch=<BRANCH_NAME> build_sbg=<True|False> repo_checkout=<ssh|https>"
 	@echo "Default values:"
 	@echo ""
 	@echo "MODE=Debug"
+	@echo "sbg_branch=sb-graph-dev"
+	@echo "build_sbg=True"
+	@echo "repo_checkout=ssh"

src/engine/.vscode/launch.json

@@ -23,6 +23,25 @@
                     "ignoreFailures": true
                 }
             ]
+        },
+
+        // Advection model
+        {
+            "name": "Advection.",
+            "type": "cppdbg",
+            "request": "launch",
+            "program": "/home/joaquin/work/qss-solver/build/advection/advection",
+            "cwd": "/home/joaquin/work/qss-solver/build/advection/",
+            "environment": [],
+            "MIMode": "gdb",
+            "setupCommands": [
+                {
+                    "description": "Enable pretty-printing for gdb",
+                    "text": "-enable-pretty-printing",
+                    "ignoreFailures": true
+                }
+            ]
         }
+
     ]
 }

src/engine/.vscode/settings.json

@@ -1,6 +1,20 @@
 {
     "files.associations": {
-        "random": "cpp"
+        "random": "cpp",
+        "qss_bdf.h": "c",
+        "array": "c",
+        "compare": "c",
+        "functional": "c",
+        "istream": "c",
+        "ostream": "c",
+        "ranges": "c",
+        "tuple": "c",
+        "type_traits": "c",
+        "utility": "c",
+        "typeindex": "c",
+        "typeinfo": "c",
+        "qss_data.h": "c"
     },
-    "C_Cpp.dimInactiveRegions": true
+    "C_Cpp.dimInactiveRegions": true,
+    "sonarlint.pathToCompileCommands": "${workspaceFolder}/compile_commands.json"
 }

src/engine/QSSSolver.doxyfile

@@ -38,7 +38,7 @@ PROJECT_NAME = "Stand-Alone QSS Solver"
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER = 4.3.0
+PROJECT_NUMBER = 4.4.0
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a

src/engine/classic/classic_cvode_integrator.c

@@ -233,6 +233,13 @@ void CVODE_integrate(SIM_simulator simulate)
     if (check_flag(&flag, "CVDense", 1, simulator)) return;
   }
 
+  if (simulator->data->params->CVODE_max_order != 0) {
+    flag = CVodeSetMaxOrd(cvode_mem, simulator->data->params->CVODE_max_order);
+    if (check_flag(&flag, "CVodeSetMaxOrd", 1, simulator)) {
+      return;
+    }
+  }
+
   getTime(simulator->stats->sTime);
   if (is_sampled) {
     CLC_save_step(simOutput, solution, solution_time, t, totalOutputSteps, NV_DATA_S(y), clcData->d, clcData->alg);