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update defaults
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alaguillog committed Jul 7, 2022
1 parent c1687d7 commit 5789f35
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion Vseq.ini
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Expand Up @@ -4,7 +4,7 @@ min_ions_matched = 2 # Min. number of matched ions required in a candidate
precursor_tolerance = 0.3 # Tolerance in Th (To match ExpNeutralMass to m/z values in mgf)
fragment_tolerance = 15 # Tolerance in ppm (Max. ppm error)
best_n = 5 # Number of candidates to make Vseq plots for
sort_by = ions_matched # Criterion to sort candidates by (Options = ions_matched, e_score, product, v_score, hyperscore)
sort_by = hyperscore # Criterion to sort candidates by (Options = ions_matched, e_score, product, v_score, hyperscore)
vseq_threshold = 10 # Min. value to plot VseqExplorer results
ppm_plot = 30 # Max. ppm error for fragments in the interpreted plot
parallelize = candidate # Criterion to parallelize by (Options = candidate, sequence, both)
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