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20 Open 61 Closed
20 Open 61 Closed
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Issues list

Begin Outputting AnnData file format
#151 opened Dec 4, 2024 by ilan-gold
1
alevin-fry infer unable to read mtx
#150 opened Nov 19, 2024 by sojichld
8
Error while aligning 10X CRISPR 5' screening scRNAseq data
#145 opened Jul 9, 2024 by eynullazada
7
Metrics for reads on a high multimapping genome
#144 opened Jul 8, 2024 by tbrunetti
1
CorrectedReads in featureDump.txt
#134 opened Feb 5, 2024 by wangjiawen2013
almost no genes detected
#133 opened Feb 1, 2024 by wangjiawen2013
zero-length barcode
#132 opened Feb 1, 2024 by wangjiawen2013
2
Using genotype based demultiplexing tools on alevin-fry output
#128 opened Jan 18, 2024 by changostraw
1
Merging replicates with different permit lists
#127 opened Nov 9, 2023 by ardecasien
2
request for a tutorial using alevin-fry for multiome datasets
#125 opened Nov 2, 2023 by klai001
Alevin-fry for SMARt-seq3 data
#124 opened Nov 1, 2023 by ssuthram-gilead
Feature request: Support for 10x "flex" fixed RNA data
#120 opened Sep 29, 2023 by pakiessling
3
Update documentation to include recommended processing for 10x scRNA 5' V2
#118 opened Aug 2, 2023 by jeremymsimon
3
Raw and filtered count data similar to cell ranger output.
#113 opened Jun 8, 2023 by bk11-lab
Feature request - Rhapsody whole genome sequences
#106 opened Feb 14, 2023 by stela2502
10
Documentation "quick-start"
#103 opened Feb 2, 2023 by schmucr1
11
How to make alevin-fry --expect cells to be better at guessing the number of cells?
#102 opened Jan 31, 2023 by ljudevitluka
3
Feature request : Demultiplexing to process 10x Fixed RNA Profiling kit enhancement New feature or request
#85 opened Oct 5, 2022 by rob-p
3
Question(dev): Benchmarking script enhancement New feature or request
#76 opened Jul 7, 2022 by Uzaaft
5
Question: how to improve cell barcode correction?
#74 opened Jun 29, 2022 by AnnaAMonaco
2
ProTip! Exclude everything labeled bug with -label:bug.