Merge pull request #466 from rafaelab/installPy #19
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name: crpropa-example-test | |
on: [push, pull_request] | |
jobs: | |
linux: | |
runs-on: ${{ matrix.config.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- name: "ubuntu-22" | |
os: ubuntu-22.04 | |
cxx: "g++-11" | |
cc: "gcc-11" | |
fc: "gfortran-11" | |
swig_builtin: "On" #uses swig 4.0.2 | |
py: "/usr/bin/python3" #python 3.10 | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v3 | |
- name: Preinstall | |
run: | | |
sudo apt-get update | |
sudo apt-get install libmuparser-dev python3 python3-dev python3-numpy python3-setuptools python-setuptools libhdf5-serial-dev libomp5 libomp-dev libfftw3-dev libcfitsio-dev lcov | |
pip3 install -r doc/pages/example_notebooks/requirements.txt # load requrements for notebooks | |
pip3 install --upgrade Pygments | |
pip3 install --upgrade numpy | |
- name: Set up the build | |
env: | |
CXX: ${{ matrix.config.cxx }} | |
CC: ${{ matrix.config.cc }} | |
FC: ${{ matrix.config.fc }} | |
run: | | |
mkdir build | |
cd build | |
cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/.local -DENABLE_PYTHON=True -DPython_EXECUTABLE=${{ matrix.config.py }} -DENABLE_TESTING=Off -DENABLE_SWIG_BUILTIN=${{ matrix.config.swig_builtin }} -DSIMD_EXTENSIONS=native | |
- name: Build CRPropa | |
run: | | |
cd build | |
make install -j | |
- name: convert notebooks to python | |
env: | |
PYTHONPATH: "/home/runner/.local" | |
runfolder: "/home/runner/notebook_run" | |
run: | | |
mkdir "$runfolder" | |
cd doc/pages/example_notebooks/ | |
for file in */*.ipynb; do | |
echo "$file" | |
if [ -f "$file" ]; then | |
f=(${file//// }) | |
f=${f[1]} | |
f=(${f//./}) | |
finalFile="$runfolder"/"$f".py | |
echo "convert notebook $file to script $finalFile" | |
jupyter nbconvert --to python "$file" --stdout | grep -v -e "^get_ipython" > "$runfolder"/"$f".py | |
fi | |
done | |
- name: run all python scripts | |
env: | |
PYTHONPATH: "/home/runner/.local" | |
runfolder: "/home/runner/notebook_run" | |
run: | | |
cp doc/pages/example_notebooks/galactic_lensing/crpropa_output.txt "$runfolder"/ | |
cd "$runfolder" | |
for file in *.py; do | |
if [ "$file" = "custom-photon-fieldipynb.py" ] || | |
[ "$file" = "MHD_modelsipynb.py" ] || | |
[ "$file" = "density_grid_samplingipynb.py" ] || | |
[ "$file" = "lensing_crv4ipynb.py" ] || | |
[ "$file" = "lensing_mapsv4ipynb.py" ]; then | |
echo "skip file $file" | |
else | |
echo "run file $file" | |
python3 $file | |
fi | |
done |