Merge pull request #220 from CSAFE-ISU/219-single-check-badge

Combined R-CMD-check GitHub Actions into a single badge
CSAFE-ISU · Feb 8, 2025 · 7f61cd0 · 7f61cd0
2 parents 7cf3a31 + cc00bc3
commit 7f61cd0
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Showing 4 changed files with 35 additions and 128 deletions.
diff --git a/.github/workflows/R-CMD-check-macos.yaml b/.github/workflows/R-CMD-check-macos.yaml
diff --git a/.github/workflows/R-CMD-check-ubuntu.yaml b/.github/workflows/R-CMD-check-ubuntu.yaml
diff --git a/.github/workflows/R-CMD-check-windows.yaml → .github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check-windows.yaml → .github/workflows/R-CMD-check.yaml
@@ -5,7 +5,7 @@ on:
     branches: [main, master]
   pull_request:
 
-name: R-CMD-check-windows.yaml
+name: R-CMD-check.yaml
 
 permissions: read-all
 
@@ -19,6 +19,10 @@ jobs:
       fail-fast: false
       matrix:
         config:
+          - {os: macOS-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
           - {os: windows-latest, r: 'release'}
 
     env:
@@ -27,6 +31,12 @@ jobs:
 
     steps:
       - uses: actions/checkout@v4
+
+      - name: Install system dependencies (Ubuntu)
+        if: runner.os == 'Linux'
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y libgsl-dev libgsl27
 
       - uses: r-lib/actions/setup-pandoc@v2
 
@@ -35,7 +45,13 @@ jobs:
           r-version: ${{ matrix.config.r }}
           http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
-
+
+      - name: Install JAGS (macOS)
+        if: runner.os == 'macOS'
+        run: |
+          brew install jags
+          echo "JAGS_HOME=$(brew --prefix jags)" >> $GITHUB_ENV
+      
       - name: Install JAGS (Windows)
         if: runner.os == 'Windows'
         run: |
@@ -57,7 +73,22 @@ jobs:
           # Clean up the installer
           Remove-Item -Path $tempDir -Recurse -Force
         shell: pwsh
-
+
+      - name: Set up JAGS environment (macOS)
+        if: runner.os == 'macOS'
+        run: |
+          echo "JAGS_LIB=$JAGS_HOME/lib" >> $GITHUB_ENV
+          echo "PKG_CONFIG_PATH=$JAGS_HOME/lib/pkgconfig:$PKG_CONFIG_PATH" >> $GITHUB_ENV
+          echo "LDFLAGS=-L$JAGS_HOME/lib" >> $GITHUB_ENV
+          echo "CPPFLAGS=-I$JAGS_HOME/include" >> $GITHUB_ENV
+          echo "LD_LIBRARY_PATH=$JAGS_HOME/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV
+          echo "DYLD_LIBRARY_PATH=$JAGS_HOME/lib:$DYLD_LIBRARY_PATH" >> $GITHUB_ENV
+          # Create symbolic links for JAGS modules
+          sudo mkdir -p /usr/local/lib/JAGS/modules-4
+          for module in basemod bugs terminal; do
+            sudo ln -sf "$JAGS_HOME/lib/JAGS/modules-4/${module}.so" "/usr/local/lib/JAGS/modules-4/${module}.so"
+          done
+      
       - name: Set up JAGS environment (Windows)
         if: runner.os == 'Windows'
         run: |

diff --git a/README.md b/README.md
@@ -2,9 +2,7 @@
 
 
 <!-- badges: start -->
-[![R-CMD-check-macos](https://github.com/CSAFE-ISU/handwriter/actions/workflows/R-CMD-check-macos.yaml/badge.svg)](https://github.com/CSAFE-ISU/handwriter/actions/workflows/R-CMD-check-macos.yaml)
-[![R-CMD-check-windows](https://github.com/CSAFE-ISU/handwriter/actions/workflows/R-CMD-check-windows.yaml/badge.svg)](https://github.com/CSAFE-ISU/handwriter/actions/workflows/R-CMD-check-windows.yaml)
-[![R-CMD-check-ubuntu](https://github.com/CSAFE-ISU/handwriter/actions/workflows/R-CMD-check-ubuntu.yaml/badge.svg)](https://github.com/CSAFE-ISU/handwriter/actions/workflows/R-CMD-check-ubuntu.yaml)
+[![R-CMD-check](https://github.com/CSAFE-ISU/handwriter/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/CSAFE-ISU/handwriter/actions/workflows/R-CMD-check.yaml)
 [![Codecov test coverage](https://codecov.io/gh/CSAFE-ISU/handwriter/graph/badge.svg)](https://app.codecov.io/gh/CSAFE-ISU/handwriter)
 <!-- badges: end -->