Skip to content

Cai-Lab-at-University-of-Michigan/ffmpeg_HDF5_filter

Repository files navigation

FFMPEG HDF5 Filter

Lossy compression filter based on ffmpeg.

Getting Started

We recommend using our precompiled files listed in the release. Our plugin supports multiple Operation Systems, which are Windows, Ubuntu, and MacOS.

For ImageJ/Fiji Users

Download the assets in the release, and put them under the plugins folder of ImageJ/Fiji.

For Python Users

We provide notebook examples in the examples folder. To set up for python, we use hdf5plugin to register our plugin.

Feedback and Questions

Feel free to reach to us. We will try our best to be there.

Acknowledgments

The cmake file borrows heavily from the jpegHDF5. Part of the encoding and decoding codes are modified from ffmpeg examples. The imagej-hdf5-viewer is modified based on ch.psi.imagej.hdf5. Very much thanks for their great work.