Cai Lab Public Tracing Datasets

A collection of publicly-released neuron tracing datasets from Cai Lab papers.

2020 Shen, et al. -- Spectral Connectomics (Nature Communications)

Found in /spectral_connectomics

Shen FY, Harrington MM, Walker LA, Cheng HPJ, Boyden ES, Cai D. Light microscopy based approach for mapping connectivity with molecular specificity. Nature Communications (2020) 11: Article 4632 (2020).

Paper Link: http://dx.doi.org/10.1038/s41467-020-18422-8

BioRxiv Link: https://doi.org/10.1101/2020.02.24.963538

2020 Dizaji, et al. -- TraceMontage (Journal of Neuroscience Methods)

Found in /tracemontage

Dizaji, A. S., Walker, L. A. & Cai, D. TraceMontage: A method for merging multiple independent neuronal traces. J. Neurosci. Methods 332, 108560 (2020).

Paper Link: https://doi.org/10.1016/j.jneumeth.2019.108560

2019 Roossien -- nTracer (Bioinformatics)

Found in /nTracer

Roossien, D. H., Sadis, B. V., Yan, Y., Webb, J. M., Min, L. Y., Dizaji, A. S., Bogart, L. J., Mazuski, C., Huth, R. S., Stecher, J. S., Akula, S., Shen, F., Li, Y., Xiao, T., Vandenbrink, M., Lichtman, J. W., Hensch, T. K., Herzog, E. D. & Cai, D. Multispectral tracing in densely labeled mouse brain with nTracer. Bioinformatics 35, 3544–3546 (2019).

Paper Link: https://doi.org/10.1093/bioinformatics/btz084