Support VTK 9 #186
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| name: build-and-test | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - '**' | |
| # Limit concurrent deployments to one per branch | |
| concurrency: | |
| group: build-and-test-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build-and-test: | |
| if: ${{ !contains(github.event.pull_request.labels.*.name, 'ci:off') }} | |
| runs-on: ubuntu-22.04 | |
| env: | |
| CHASTE_TEST_OUTPUT: ${{ github.workspace }}/chaste-test-dir | |
| steps: | |
| - name: checkout Chaste repository | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: Chaste/Chaste | |
| ref: develop | |
| path: Chaste | |
| submodules: recursive | |
| - name: checkout PyChaste repository | |
| uses: actions/checkout@v4 | |
| with: | |
| path: Chaste/projects/PyChaste | |
| submodules: recursive | |
| - name: install Chaste dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y --no-install-recommends \ | |
| cmake \ | |
| cmake-curses-gui \ | |
| doxygen \ | |
| g++ \ | |
| git \ | |
| gnuplot \ | |
| graphviz \ | |
| hdf5-tools \ | |
| lcov \ | |
| libboost-serialization-dev \ | |
| libboost-filesystem-dev \ | |
| libboost-program-options-dev \ | |
| libfltk1.1 \ | |
| libhdf5-openmpi-dev \ | |
| libmetis-dev \ | |
| libopenmpi-dev \ | |
| libparmetis-dev \ | |
| libpetsc-real3.15-dbg \ | |
| libsundials-dev \ | |
| libvtk7-dev \ | |
| libxerces-c-dev \ | |
| mencoder \ | |
| paraview \ | |
| petsc-dev \ | |
| python3 \ | |
| python3-dev \ | |
| python3-pip \ | |
| python3-venv \ | |
| valgrind \ | |
| xsdcxx | |
| - name: install PyChaste dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y \ | |
| castxml \ | |
| python3-matplotlib \ | |
| python3-notebook \ | |
| python3-numpy \ | |
| python3-petsc4py \ | |
| python3-pytest \ | |
| python3-six \ | |
| python3-vtk7 \ | |
| python3-xvfbwrapper \ | |
| xvfb | |
| sudo python3 -m pip install --upgrade pip | |
| sudo pip install pygccxml pyyaml | |
| - name: make build and test directories | |
| run: | | |
| mkdir -p Chaste/build | |
| mkdir -p ${CHASTE_TEST_OUTPUT} | |
| - name: cmake configure | |
| run: cmake -DCMAKE_BUILD_TYPE=Release .. | |
| working-directory: Chaste/build | |
| - name: build project_PyChaste | |
| run: cmake --build . --parallel $(nproc) --target project_PyChaste | |
| working-directory: Chaste/build | |
| - name: build project_PyChaste_Python | |
| run: cmake --build . --parallel $(nproc) --target project_PyChaste_Python | |
| working-directory: Chaste/build | |
| - name: install PyChaste | |
| run: pip install --user . | |
| working-directory: Chaste/build/projects/PyChaste/python | |
| - name: run tests | |
| run: xvfb-run --server-args="-screen 0 1024x768x24" ctest -j $(nproc) -L PyChaste --output-on-failure | |
| working-directory: Chaste/build |