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Add PyChaste Support for VTK 8 #23

Closed
Tracked by #27
kwabenantim opened this issue Jul 17, 2023 · 2 comments · Fixed by #69
Closed
Tracked by #27

Add PyChaste Support for VTK 8 #23

kwabenantim opened this issue Jul 17, 2023 · 2 comments · Fixed by #69
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@kwabenantim
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enhancement New feature or request
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BBR milestone 3.1

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kwabenantim commented Jul 17, 2023 •
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Description

API changes:
@kwabenantim kwabenantim added the enhancement New feature or request label Jul 17, 2023
@kwabenantim kwabenantim self-assigned this Jul 17, 2023
@kwabenantim kwabenantim mentioned this issue Jul 22, 2023
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@kwabenantim kwabenantim mentioned this issue Aug 11, 2023
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@kwabenantim kwabenantim added this to the BBR milestone 3.1 milestone Sep 19, 2023
@kwabenantim kwabenantim changed the title Support VTK 8 Add PyChaste Support for VTK 8 Nov 14, 2023
@kwabenantim kwabenantim mentioned this issue Nov 14, 2023
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@kwabenantim kwabenantim mentioned this issue Apr 19, 2024
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kwabenantim added a commit that referenced this issue Apr 23, 2024
@kwabenantim
#23 clarify pychaste vtk required components
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@kwabenantim kwabenantim mentioned this issue Apr 23, 2024
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kwabenantim added a commit that referenced this issue May 8, 2024
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#23 relax cmake vtk parallel mpi constraint
00d2730
kwabenantim added a commit that referenced this issue May 10, 2024
@kwabenantim
#23 update vtk6 config
c1d03fb
kwabenantim added a commit that referenced this issue May 14, 2024
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#23 update cmake find python vars
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kwabenantim commented May 14, 2024 •
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https://github.com/Chaste/PyChaste/actions/runs/9084908639/job/24966962622

The following tests FAILED:
	559 - TestVtkSceneWithCaBased (Failed)
	560 - TestVtkSceneWithMeshBased (Failed)
	571 - TestCaBasedCellPopulationPython (Failed)
	572 - TestMeshBasedCellPopulationPython (Failed)
	573 - TestVertexBasedCellPopulationPython (Failed)
	574 - TestNodeBasedCellPopulationPython (Failed)
	575 - TestImmersedBoundaryTutorial (Failed)
	576 - TestMeshBasedCellSimulationsPythonTutorial (Failed)
	579 - TestVertexBasedCellSimulationsPythonTutorial (Failed)
	580 - TestScratchAssayTutorial (Failed)
	582 - TestCellSortingTutorial (Failed)
	583 - TestSpheroidTutorial (Failed)
	584 - TestJupyterNotebookManager (Failed)

kwabenantim added a commit that referenced this issue May 14, 2024
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#23 add vtk-test workflow
6e34e3b
@kwabenantim kwabenantim mentioned this issue May 14, 2024
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kwabenantim added a commit that referenced this issue May 14, 2024
@kwabenantim
Merge pull request #70 from Chaste/23-add-vtk-tests
0b3a27c 
#23 add vtk-test workflow
kwabenantim added a commit that referenced this issue May 14, 2024
@kwabenantim
#23 move test-vtk workflow
98b532a
kwabenantim added a commit that referenced this issue May 14, 2024
@kwabenantim
Merge pull request #71 from Chaste/23-add-vtk-tests
0fea8c3 
#23 move test-vtk workflow
kwabenantim added a commit that referenced this issue May 14, 2024
@kwabenantim
#23 switch vtk test workflow to micromamba
d6819e0
kwabenantim added a commit that referenced this issue May 14, 2024
@kwabenantim
#23 cache mamba workflow downloads
0d79111
kwabenantim added a commit that referenced this issue May 14, 2024
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#23 install conda packages to test-env
4589de3
kwabenantim added a commit that referenced this issue May 14, 2024
@kwabenantim
#23 adding conda channels to vtk test
99cc4b4
kwabenantim added a commit that referenced this issue May 14, 2024
@kwabenantim
#23 update vtk workflow spec syntax
2ba2a52
kwabenantim added a commit that referenced this issue May 14, 2024
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#23 cache vtk conda test env
7af7c7a
kwabenantim added a commit that referenced this issue May 14, 2024
@kwabenantim
#23 disable micromamba run shell
da0ccce
kwabenantim added a commit that referenced this issue May 14, 2024
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#23 add fftw to vtk test dependencies
c15d8ff
kwabenantim added a commit that referenced this issue May 14, 2024
@kwabenantim
#23 fix conda cmake paths
0c1d5f3
kwabenantim added a commit that referenced this issue May 14, 2024
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#23 find python3 executable
4fe667d
kwabenantim added a commit that referenced this issue May 15, 2024
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#23 add matplotlib and numpy to tests
6ec3ab4
kwabenantim added a commit that referenced this issue May 15, 2024
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#23 render window before image filter
206820d
kwabenantim added a commit that referenced this issue May 15, 2024
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#23 remove redundant header text
d4ebca6
kwabenantim added a commit that referenced this issue May 15, 2024
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#23 update TestVtkSceneWithCaBased
eb3de86
kwabenantim added a commit that referenced this issue May 16, 2024
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#23 no renderer clear
d5fc9e7
kwabenantim added a commit that referenced this issue May 16, 2024
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#23 update immersed boundary tutorial
579aea9
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Tests are now passing for VTK8: https://github.com/Chaste/PyChaste/actions/runs/9113309674/job/25054486472

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Support VTK8 Chaste/PyChaste
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