Standardise numbers in default args #21
Workflow file for this run
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| name: test-cells-conda | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - "**" | |
| jobs: | |
| test-cells-conda: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
| concurrency: | |
| group: test-cells-conda-${{ github.ref }}-${{ matrix.python-version }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash -el {0} # -l needed to activate conda | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install castxml clang cmake git | |
| - name: Setup Miniconda Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| use-mamba: true | |
| miniforge-version: latest | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge,defaults | |
| conda-remove-defaults: "false" | |
| - name: Install cppwg | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install . | |
| - name: Install requirements | |
| run: mamba install --yes --file conda/requirements.txt | |
| working-directory: examples/cells | |
| - name: Set config paths | |
| run: | | |
| echo "CMAKE_PREFIX_PATH=$CONDA_PREFIX;$CMAKE_PREFIX_PATH" >> $GITHUB_ENV | |
| echo "PETSC_DIR=$CONDA_PREFIX" >> $GITHUB_ENV | |
| echo "PETSC_ARCH=" >> $GITHUB_ENV | |
| echo "VTK_DIR=$CONDA_PREFIX" >> $GITHUB_ENV | |
| - name: Configure | |
| run: | | |
| mkdir build && cd build | |
| cmake .. | |
| working-directory: examples/cells | |
| - name: Regenerate wrappers | |
| run: | | |
| rm -rf dynamic/wrappers | |
| cd build | |
| make pycells_wrappers | |
| working-directory: examples/cells | |
| - name: Check for changes | |
| run: | | |
| git diff --exit-code dynamic/wrappers | |
| grep "Unknown class" build/cppwg.log | |
| working-directory: examples/cells | |
| - name: Install conda-build tools | |
| run: mamba install boa conda-build conda-verify | |
| - name: Build | |
| run: | | |
| conda mambabuild recipe -m variants/python${{ matrix.python-version }}.yaml | |
| working-directory: examples/cells/conda | |
| - name: Install | |
| run: mamba install --use-local pycells | |
| - name: Test | |
| run: python -m unittest discover tests | |
| working-directory: examples/cells |