Typecaster examples

.flake8

@@ -6,9 +6,10 @@ exclude =
     .git,
     .github,
     build,
+    cppwg/templates,
     doc,
     examples,
-    cppwg/templates,
+    _skbuild,
     tests,
     venv,
 

.github/workflows/test-cells-conda.yml

@@ -0,0 +1,91 @@
+name: test-cells-conda
+
+on:
+  workflow_dispatch:
+  pull_request:
+    branches:
+      - "**"
+
+jobs:
+  test-cells-conda:
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
+
+    concurrency:
+      group: test-cells-conda-${{ github.ref }}-${{ matrix.python-version }}
+      cancel-in-progress: true
+
+    defaults:
+      run:
+        shell: bash -el {0} # -l needed to activate conda
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Install system dependencies
+        run: |
+          sudo apt-get update
+          sudo apt-get install cmake git
+
+      - name: Setup Miniconda Python ${{ matrix.python-version }}
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          auto-update-conda: true
+          use-mamba: true
+          miniforge-version: latest
+          python-version: ${{ matrix.python-version }}
+          channels: conda-forge
+
+      - name: Install cppwg
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install .
+
+      - name: Install requirements
+        run: mamba install --yes --file conda/requirements.txt
+        working-directory: examples/cells
+
+      - name: Set config paths
+        run: |
+          echo "CMAKE_PREFIX_PATH=$CONDA_PREFIX;$CMAKE_PREFIX_PATH" >> $GITHUB_ENV
+          echo "PETSC_DIR=$CONDA_PREFIX" >> $GITHUB_ENV
+          echo "PETSC_ARCH=" >> $GITHUB_ENV
+          echo "VTK_DIR=$CONDA_PREFIX" >> $GITHUB_ENV
+
+      - name: Configure
+        run: |
+          mkdir build && cd build
+          cmake ..
+        working-directory: examples/cells
+
+      - name: Regenerate wrappers
+        run: |
+          rm -rf dynamic/wrappers
+          cd build
+          make pycells_wrappers
+        working-directory: examples/cells
+
+      - name: Check for changes
+        run: |
+          git diff --exit-code dynamic/wrappers
+          grep "Unknown class" build/cppwg.log
+        working-directory: examples/cells
+
+      - name: Install conda-build tools
+        run: mamba install boa conda-build conda-verify
+
+      - name: Build
+        run: conda mambabuild recipe -m variants/python${{ matrix.python-version }}.yaml
+        working-directory: examples/cells/conda
+
+      - name: Install
+        run: mamba install --use-local pycells
+
+      - name: Test
+        run: python -m unittest discover tests
+        working-directory: examples/cells

.github/workflows/test-cells-ubuntu.yml

@@ -0,0 +1,69 @@
+name: test-cells-ubuntu
+
+on:
+  workflow_dispatch:
+  pull_request:
+    branches:
+      - "**"
+
+concurrency:
+  group: test-cells-ubuntu-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  test-cells-ubuntu:
+    runs-on: ubuntu-22.04
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Install system dependencies
+        run: |
+          sudo apt-get update
+          sudo apt-get install \
+            cmake \
+            git \
+            libboost-all-dev \
+            libpetsc-real3.15 \
+            libpetsc-real3.15-dbg \
+            libpetsc-real3.15-dev \
+            libvtk9-dev \
+            mpi-default-bin \
+            mpi-default-dev \
+            python3-mpi4py \
+            python3-petsc4py-real3.15 \
+            python3-vtk9 \
+            vtk9
+
+      - name: Install cppwg
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install .
+
+      - name: Configure
+        run: |
+          mkdir build && cd build
+          cmake ..
+        working-directory: examples/cells
+
+      - name: Regenerate wrappers
+        run: |
+          rm -rf dynamic/wrappers
+          cd build
+          make pycells_wrappers
+        working-directory: examples/cells
+
+      - name: Check for changes
+        run: |
+          git diff --exit-code dynamic/wrappers
+          grep "Unknown class" build/cppwg.log
+        working-directory: examples/cells
+
+      - name: Build
+        run: python -m pip install -v .
+        working-directory: examples/cells
+
+      - name: Test
+        run: python -m unittest discover tests
+        working-directory: examples/cells

.github/workflows/test-shapes-pip.yml

@@ -0,0 +1,72 @@
+name: test-shapes-pip
+
+on:
+  workflow_dispatch:
+  pull_request:
+    branches:
+      - "**"
+
+jobs:
+  test-shapes-pip:
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13"]
+
+    concurrency:
+      group: test-shapes-pip-${{ github.ref }}-${{ matrix.python-version }}
+      cancel-in-progress: true
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Install system dependencies
+        run: |
+          sudo apt-get update
+          sudo apt-get install cmake git
+
+      - name: Setup Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install cppwg
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install .
+
+      - name: Regenerate wrappers
+        run: |
+          rm -rf wrapper/*/
+          cppwg src/cpp \
+            --wrapper_root wrapper/ \
+            --package_info wrapper/package_info.yaml \
+            --includes src/cpp/*/ \
+            --std c++17 \
+            --logfile cppwg.log
+        working-directory: examples/shapes
+
+      - name: Check for changes
+        run: |
+          git diff --exit-code wrapper
+          grep "Unknown class" cppwg.log
+        working-directory: examples/shapes
+
+      - name: Configure
+        run: |
+          mkdir build && cd build
+          cmake ..
+        working-directory: examples/shapes
+
+      - name: Build
+        run: make -j $(nproc)
+        working-directory: examples/shapes/build
+
+      - name: Test
+        run: |
+          python -m unittest test_functions.py
+          python -m unittest test_classes.py
+        working-directory: examples/shapes/build

.github/workflows/test-style.yml

@@ -0,0 +1,34 @@
+name: test-style
+
+on:
+  workflow_dispatch:
+  pull_request:
+    branches:
+      - "**"
+
+concurrency:
+  group: test-style-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  test-style:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Install dependencies
+        run: |
+          sudo apt-get update && \
+          sudo apt-get install cmake
+
+      - name: Install cppwg
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install .[dev]
+
+      - name: Lint
+        run: |
+          python -m flake8 --version
+          python -m flake8 .

.gitignore

@@ -14,6 +14,7 @@ __pycache__/
 .Python
 env/
 build/
+_skbuild/
 develop-eggs/
 dist/
 downloads/

README.md

@@ -1,4 +1,6 @@
-![build](https://github.com/Chaste/cppwg/actions/workflows/build-and-test.yml/badge.svg)
+![pip](https://github.com/Chaste/cppwg/actions/workflows/test-shapes-pip.yml/badge.svg)
+![ubuntu](https://github.com/Chaste/cppwg/actions/workflows/test-cells-ubuntu.yml/badge.svg)
+![conda](https://github.com/Chaste/cppwg/actions/workflows/test-cells-conda.yml/badge.svg)
 
 # cppwg
 
@@ -89,7 +91,7 @@ cd examples/shapes
 cppwg src/cpp \
   --wrapper_root wrapper \
   --package_info wrapper/package_info.yaml \
-  --includes src/cpp/geometry src/cpp/math_funcs src/cpp/mesh src/cpp/primitives extern/meshgen
+  --includes src/cpp/geometry src/cpp/math_funcs src/cpp/mesh src/cpp/primitives
 ```
 
 For the `Rectangle` class, this creates two files in

cppwg/info/base_info.py

@@ -106,7 +106,6 @@ def __init__(self, name: str, info_config: Optional[Dict[str, Any]] = None) -> N
             "unsigned int": "Unsigned",
             "Unsigned int": "Unsigned",
             "unsigned": "Unsigned",
-            "double": "Double",
             "std::vector": "Vector",
             "std::pair": "Pair",
             "std::map": "Map",