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microeco v1.9.0

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@ChiLiubio ChiLiubio released this 17 Aug 01:46
· 41 commits to master since this release

• use plot_type parameter instead of use_boxplot in plot_alpha of trans_alpha
• more plot options in plot_type parameter in plot_alpha of trans_alpha
• use add parameter instead of boxlot_add in plot_alpha of trans_alpha
• add partial parameter for partial correlation in cal_cor of trans_env
• set line_alpha = 0.5 in plot_scatterfit of trans_env
• add up_bar_width and left_bar_width parameters in plot_bar of trans_venn
• add left_bar_alpha, bottom_line_colour, bottom_line_width and bottom_background_alpha parameters in plot_bar of trans_venn
• add PLS-DA method in cal_ordination of trans_beta
• add add_sig_text_size parameter in plot_diff_abund of trans_diff
• add rf_imp_type parameter for rf in trans_diff
• add parameter passing for rf in trans_diff
• delete rf_ntree parameter in trans_diff
• update the usage of lefse_norm param in trans_diff
• compare mean when medians are same across groups in lefse of trans_diff
• check the prefix in cladogram of trans_diff
• fix R2 issue for glmm_beta method in trans_diff
• restructure the R2 output format for lme and glmm methods in trans_alpha and trans_diff
• extend tidy_taxonomy for microtable input
• rename parameter use_group to group in merge_samples function of microtable
• stop when tbl_df format data is found in microtable
• fix parameter usename_rawtaxa_notOTU NA issue in cal_network of trans_network
• import igraph >= 2.0.0