Skip to content
@Citrus-HLB-Micro

UCR Citrus ECDRE HLB project

CAP: Combining Cultural and Genetic Approaches for Grove Success to Unravel and Enhance Resistance/Tolerance to Huanglongbing

Citrus photo

The research objective of this proposal is to investigate the root collapse associated with Huanglongbing (HLB)-impacted trees and ways to mitigate it by promoting root health. Our previous work demonstrates that as HLB severity increases, the root microbiome becomes enriched in soil-borne pathogens. We will conduct experiments to empirically determine if these pathogens exacerbate the HLB-associated root and canopy decline. We will integrate field studies that test HLB resistant/tolerant rootstocks and use of soil amendments that promote root health to determine if they suppress pathogens in the roots and prolong tree longevity/productivity under HLB pressure. These field studies will include newly established groves and mature groves. To support our field trials and decipher the genes/gene pathways that dictate how plants respond to HLB, we will determine how rootstocks and scions respond toCandidatusLiberibacter asiaticus using citrus varieties that are either highly HLB-susceptible or HLB-resistant using a combination of disease phenotyping and gene expression analyses. We will integrate this research with a robust extension and outreach program in combination with an economic cost-benefit analysis structured around adoption of treatments that enhance root health into commercial citriculture.

NIFA abstract

Popular repositories Loading

  1. Fusarium_OrthoCompare Fusarium_OrthoCompare Public

    Process Orthogroups

    R 1

  2. Amplicon_PreProcess Amplicon_PreProcess Public

    Sample Sheets for Amplicon Runs

    Shell 1

  3. .github .github Public

    Project README

  4. Citrus-HLB-Micro.github.io Citrus-HLB-Micro.github.io Public

    CAP Citrus Project for HLB

  5. PIlot_Extraction PIlot_Extraction Public

    Pilot Extraction technology

    HTML

  6. Genome_Fungal_Culture Genome_Fungal_Culture Public

    Genome assembly and annotation of fungal genomes from Citrus microbiome culture collection

    Shell

Repositories

Showing 10 of 12 repositories
  • Amplicon_PreProcess Public

    Sample Sheets for Amplicon Runs

    Citrus-HLB-Micro/Amplicon_PreProcess’s past year of commit activity
    Shell 1 MIT 0 0 0 Updated May 2, 2024
  • Amplicon_Years_0_1 Public

    Analysis of Years 0-1 of the Citrus project

    Citrus-HLB-Micro/Amplicon_Years_0_1’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated May 2, 2024
  • Amplicon_Year0-1_demo Public

    demonstration of amptk + phyloseq plots for Years 0 & 1 data

    Citrus-HLB-Micro/Amplicon_Year0-1_demo’s past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 12, 2023
  • Metagenome_Citrus_Hi3C Public

    Citrus tissue microbiome/metagenome with Phase Hi3C

    Citrus-HLB-Micro/Metagenome_Citrus_Hi3C’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated May 10, 2023
  • Metagenome_Citrus_Pilot_2022_12 Public

    Pilot Metagenome data

    Citrus-HLB-Micro/Metagenome_Citrus_Pilot_2022_12’s past year of commit activity
    Roff 0 0 0 0 Updated May 2, 2023
  • Fusarium_OrthoCompare Public

    Process Orthogroups

    Citrus-HLB-Micro/Fusarium_OrthoCompare’s past year of commit activity
    R 1 MIT 0 0 0 Updated Jan 23, 2023
  • Genome_Fungal_Culture Public

    Genome assembly and annotation of fungal genomes from Citrus microbiome culture collection

    Citrus-HLB-Micro/Genome_Fungal_Culture’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Jan 12, 2023
  • Fusarium_Chrom_Correspondance Public

    Correspondance of Fusarium isolate chromosomes

    Citrus-HLB-Micro/Fusarium_Chrom_Correspondance’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Oct 18, 2022
  • Metagenome_Xu_NatCom_2018 Public

    Metagenome analysis of Xu et al NatCom 2018 data for extracting MAGs

    Citrus-HLB-Micro/Metagenome_Xu_NatCom_2018’s past year of commit activity
    MAXScript 0 0 0 0 Updated Aug 21, 2022
  • PIlot_Extraction Public

    Pilot Extraction technology

    Citrus-HLB-Micro/PIlot_Extraction’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 9, 2021

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…