remove unused callers from tests

Clinical-Genomics · Apr 26, 2022 · 0f3cc8e · 0f3cc8e
1 parent 4ee0ff8
commit 0f3cc8e
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Showing 2 changed files with 0 additions and 26 deletions.
diff --git a/tests/conftest.py b/tests/conftest.py
@@ -600,11 +600,9 @@ def sample_config():
             "vardict": {"mutation": "somatic", "type": "SNV"},
             "mutect": {"mutation": "somatic", "type": "SNV"},
             "tnscope": {"mutation": "somatic", "type": "SNV"},
-            "tnsnv": {"mutation": "somatic", "type": "SNV"},
             "tnhaplotyper": {"mutation": "somatic", "type": "SNV"},
             "dnascope": {"mutation": "germline", "type": "SNV"},
             "manta_germline": {"mutation": "germline", "type": "SV"},
-            "haplotypecaller": {"mutation": "germline", "type": "SNV"},
         },
         "samples": {
             "S1_R": {

diff --git a/tests/test_data/config.json b/tests/test_data/config.json
@@ -24,36 +24,12 @@
             "merged": "manta_germline.vcf.gz",
             "type": "SV"
         },
-        "strelka_germline": {
-            "default": ["variants.vcf.gz", "germline.S1.vcf.gz"],
-            "mutation": "germline",
-            "merged": "strelka_germline.vcf.gz",
-            "type": "SNV"
-        },
-        "strelka": {
-            "default": ["somatic.snvs.vcf.gz", "somatic.indels.vcf.gz"],
-            "mutation": "somatic",
-            "merged": "strelka.vcf.gz",
-            "type": "SNV"
-        },
         "mutect": {
             "default": "mutect.vcf.gz",
             "mutation": "somatic",
             "merged": "mutect.vcf.gz",
             "type": "SNV"
         },
-        "freebayes": {
-            "default": "freebayes.vcf.gz",
-            "mutation": "germline",
-            "merged": "freebayes.vcf.gz",
-            "type": "SNV"
-        },
-        "haplotypecaller": {
-            "default": "haplotypecaller.vcf.gz",
-            "mutation": "germline",
-            "merged": "haplotypecaller.vcf.gz",
-            "type": "SNV"
-        },
         "vardict": {
             "default": "vardict.vcf.gz",
             "mutation": "somatic",