fix threads to index

Clinical-Genomics · Nov 15, 2023 · 55c7ee5 · 55c7ee5
1 parent b284537
commit 55c7ee5
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/BALSAMIC/snakemake_rules/align/sentieon_alignment.rule b/BALSAMIC/snakemake_rules/align/sentieon_alignment.rule
@@ -107,7 +107,7 @@ rule samtools_sort_index:
     shell:
         """
 samtools sort --threads {threads} -o {output.bam} {input.bam};
-samtools index --threads {threads} {output.bam};
+samtools index -@ {threads} {output.bam};
         """