fix: qos express (#887)

* add new QoS tag to `express` balsamic cli
Clinical-Genomics · Apr 4, 2022 · 9578e97 · 9578e97
1 parent 385740c
commit 9578e97
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Showing 5 changed files with 20 additions and 5 deletions.
diff --git a/.github/workflows/black_linter.yml b/.github/workflows/black_linter.yml
@@ -11,4 +11,4 @@ jobs:
       - uses: psf/black@stable
         with:
           options: "--check --verbose"
-          version: "21.7b0"
+          version: "22.3.0"
diff --git a/BALSAMIC/commands/init/base.py b/BALSAMIC/commands/init/base.py
@@ -126,7 +126,7 @@
 )
 @click.option(
     "--qos",
-    type=click.Choice(["low", "normal", "high"]),
+    type=click.Choice(["low", "normal", "high", "express"]),
     show_default=True,
     default="low",
     help="QOS for sbatch jobs. Passed to " + get_schedulerpy(),

diff --git a/BALSAMIC/commands/run/analysis.py b/BALSAMIC/commands/run/analysis.py
@@ -106,7 +106,7 @@
 )
 @click.option(
     "--qos",
-    type=click.Choice(["low", "normal", "high"]),
+    type=click.Choice(["low", "normal", "high", "express"]),
     show_default=True,
     default="low",
     help="QOS for sbatch jobs. Passed to " + get_schedulerpy(),

diff --git a/CHANGELOG.rst b/CHANGELOG.rst
@@ -1,7 +1,22 @@
-[8.2.9]
+[X.X.X]
 -------
 
 
+Added:
+^^^^^^
+* Added slurm qos tag `express` #885
+* Included more text about UMI-workflow variant calling settings to the readthedocs #888
+
+
+Fixes:
+^^^^^^
+* Automate balsamic version for readthedocs install page #888
+
+Changed:
+^^^^^^^^
+Upgrade black to 22.3.0
+
+
 
 [8.2.8]
 -------

diff --git a/requirements-dev.txt b/requirements-dev.txt
@@ -2,6 +2,6 @@ pytest>=3.7.1
 pytest-cov==2.8.1
 coveralls
 pylint
-black==21.7b0
+black==22.3.0
 pillow>=8.4.0
 fpdf2>=2.4.6