docs: update balsamic method version in bumpversion (#930)

* edit version in balsamic methods * update bumpeversion list for version changes * change log update
Clinical-Genomics · May 23, 2022 · ef1f22c · ef1f22c
1 parent 8a299ac
commit ef1f22c
Show file tree

Hide file tree

Showing 3 changed files with 7 additions and 3 deletions.
diff --git a/.bumpversion.cfg b/.bumpversion.cfg
@@ -19,6 +19,9 @@ tag_name = v{new_version}
 [bumpversion:file:docs/user_guide.rst]
 
 [bumpversion:file:docs/install.rst]
+
+[bumpversion:file:docs/balsamic_methods.rst]
+
 search = {current_version}
 replace = {new_version}
 
diff --git a/CHANGELOG.rst b/CHANGELOG.rst
@@ -4,6 +4,7 @@
 Fixed:
 ^^^^^^
 * Revert `csvkit` tool in align_qc container #928 
+* Automatic version update for balsamic methods #930
 
 [9.0.0]
 --------

diff --git a/docs/balsamic_methods.rst b/docs/balsamic_methods.rst
@@ -5,7 +5,7 @@ BALSAMIC METHODS
 Target Genome Analysis
 ~~~~~~~~~~~~~~~~~~~~~~
 
-BALSAMIC :superscript:`1` (**version** = 8.2.10) was used to analyze the data from raw FASTQ files.
+BALSAMIC :superscript:`1` (**version** = 9.0.1) was used to analyze the data from raw FASTQ files.
 We first quality controlled FASTQ files using FastQC v0.11.9 :superscript:`2`.
 Adapter sequences and low-quality bases were trimmed using fastp v0.23.2 :superscript:`3`.
 Trimmed reads were mapped to the reference genome hg19 using BWA MEM v0.7.17 :superscript:`4`.
@@ -26,7 +26,7 @@ to annotate somatic variants for their population allele frequency from gnomAD v
 Whole Genome Analysis
 ~~~~~~~~~~~~~~~~~~~~~
 
-BALSAMIC :superscript:`1` (**version** = 8.2.10) was used to analyze the data from raw FASTQ files.
+BALSAMIC :superscript:`1` (**version** = 9.0.1) was used to analyze the data from raw FASTQ files.
 We first quality controlled FASTQ files using FastQC v0.11.9 :superscript:`2`.
 Adapter sequences and low-quality bases were trimmed using fastp v0.23.2 :superscript:`3`.
 Trimmed reads were mapped to the reference genome hg19 using sentieon-tools :superscript:`15`.
@@ -46,7 +46,7 @@ to annotate somatic variants for their population allele frequency from gnomAD v
 UMI Data Analysis
 ~~~~~~~~~~~~~~~~~~~~~
 
-BALSAMIC :superscript:`1` (**version** = 8.2.10) was used to analyze the data from raw FASTQ files.
+BALSAMIC :superscript:`1` (**version** = 9.0.1) was used to analyze the data from raw FASTQ files.
 We first quality controlled FASTQ files using FastQC v0.11.9 :superscript:`2`.
 Adapter sequences and low-quality bases were trimmed using fastp v0.23.2 :superscript:`3`.
 UMI tag extraction and consensus generation were performed using Sentieon tools v202010.02 :superscript:`15`.
-Original file line number
+Diff line change
@@ Expand Up / @@ -4,6 +4,7 @@ @@
     Fixed:
     ^^^^^^
     * Revert `csvkit` tool in align_qc container #928
+    * Automatic version update for balsamic methods #930
     [9.0.0]
     --------
@@ Expand Down @@