update yaml fixture

Clinical-Genomics · Jan 24, 2025 · 680c6f6 · 680c6f6
1 parent 019738b
commit 680c6f6
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Showing 2 changed files with 16 additions and 14 deletions.
diff --git a/tests/conftest.py b/tests/conftest.py
@@ -2678,7 +2678,7 @@ def nallo_deliverable_data(nallo_dir: Path, nallo_case_id: str, sample_id: str)
 def nallo_metrics_deliverables(nallo_analysis_dir: Path) -> list[dict]:
     """Returns the content of a mock metrics deliverables file."""
     return read_yaml(
-        file_path=Path(nallo_analysis_dir, "nallo_case_enough_reads_metrics_deliverables.yaml")
+        file_path=Path(nallo_analysis_dir, "nallo_fixture_for_metrics_deliverables.yaml")
     )
 
 

diff --git a/...se_enough_reads_metrics_deliverables.yaml → ...llo_fixture_for_metrics_deliverables.yaml b/...se_enough_reads_metrics_deliverables.yaml → ...llo_fixture_for_metrics_deliverables.yaml
@@ -2,78 +2,80 @@
 metrics:
 - condition: null
   header: null
-  id: ADM1_1
+  id: ADM1
   input: multiqc_data.json
   name: mean_coverage
   step: multiqc
   value: 32.18
 - condition: null
   header: null
-  id: ADM1_1
+  id: ADM1
   input: multiqc_data.json
   name: min_coverage
   step: multiqc
   value: 0.0
 - condition: null
   header: null
-  id: ADM1_1
+  id: ADM1
   input: multiqc_data.json
   name: max_coverage
   step: multiqc
   value: 63906.0
 - condition: null
   header: null
-  id: ADM1_1
+  id: ADM1
   input: multiqc_data.json
   name: coverage_bases
   step: multiqc
   value: 99366056494
 - condition: null
   header: null
-  id: ADM1_1
+  id: ADM1
   input: multiqc_data.json
   name: length
   step: multiqc
   value: 3088286377
 - condition: null
   header: null
-  id: ADM1_1
+  id: ADM1
   input: multiqc_data.json
   name: 1_x_pc
   step: multiqc
   value: 94.0
 - condition: null
   header: null
-  id: ADM1_1
+  id: ADM1
   input: multiqc_data.json
   name: 5_x_pc
   step: multiqc
   value: 94.0
 - condition: null
   header: null
-  id: ADM1_1
+  id: ADM1
   input: multiqc_data.json
   name: 10_x_pc
   step: multiqc
   value: 93.0
 - condition: null
   header: null
-  id: ADM1_1
+  id: ADM1
   input: multiqc_data.json
   name: 30_x_pc
   step: multiqc
   value: 65.0
 - condition: null
   header: null
-  id: ADM1_1
+  id: ADM1
   input: multiqc_data.json
   name: 50_x_pc
   step: multiqc
   value: 2.0
-- condition: null
+- condition:
+    norm: gt
+    threshold: 25.0
   header: null
-  id: ADM1_1
+  id: ADM1
   input: multiqc_data.json
   name: median_coverage
   step: multiqc
-  value: 13
+  value: 33