feat(pydantic): Restart branch

[henrikstranneheim]

Description

Added

Changed

Fixed

How to prepare for test

• Ssh to relevant server (depending on type of change)
• Use stage: us
• Paxa the environment: paxa
• Install on stage (example for Hasta):

  bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_cg -t cg -b update-pydantic-qcmetrics-2

How to test

• Do ...

Expected test outcome

• Check that ...
• Take a screenshot and attach or copy/paste the output.

Review

• Tests executed by
• "Merge and deploy" approved by
  Thanks for filling in who performed the code review and the test!

This version is a

• MAJOR - when you make incompatible API changes
• MINOR - when you add functionality in a backwards compatible manner
• PATCH - when you make backwards compatible bug fixes or documentation/instructions

Implementation Plan

• Document in ...
• Deploy this branch on ...
• Inform to ...

[henrikstranneheim]

@islean Tried to force validation of capture kit version and genome build. What do you think? I´m off next week so I won't be able to test it.

[islean]

@islean Tried to force validation of capture kit version and genome build. What do you think? I´m off next week so I won't be able to test it.

@henrikstranneheim Looks promising! I can test it next week and merge it if successful!

[henrikstranneheim]

@islean @mathiasbio Is there a good test case on stage for this one?

[henrikstranneheim]

@islean @mathiasbio Is there a good test case on stage for this one?

[islean]

@islean @mathiasbio Is there a good test case on stage for this one?

Sorry, I was sick for a few days but I think @mathiasbio should know this better than me and he probably knows if there are still testing issues with regards to Balsamic. When I wanted to test some fixes I ran the stage binary with the prod config and cg generate delivery-report --dry-run on a production case. Should probably work for this PR too?

[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarCloud

[henrikstranneheim]

cg generate delivery-report, 👍

1:11] [hiseq.clinical@hasta:~] [S_base]  $ /home/proj/stage/bin/miniconda3/envs/S_cg/bin/cg --config /home/proj/production/servers/config/hasta.scilifelab.se/cg.yaml generate delivery-report solidlemming --dry-run
.
.
.
        <!-- Signature -->
          <div class="container mb-5">
  <h3 class="mb-4">Signatur för godkännande av rapport</h3>
  <div>
    Valtteri Wirta<br />
    Director, Clinical Genomics
  </div>
</div>
          <!-- Ticket communication -->

  <div class="container">
    <div class="alert alert-info" role="alert">
      All kommunikation gällande ordern, såsom tillägg, avvikelser eller ev undantag i metoden från
      Clinical Genomics, finns tillgänglig i SupportSystem och är länkad till ärendets ticket:
      <a class="alert-link">#1000775</a>. En stängd ticket kan närsomhelst öppnas upp igen för frågor.
    </div>
  </div>

        </div>
        <!-- Report footer -->
        <div class="card-footer text-center text-body-secondary">Slut på rapport</div>
      </div>
    </div>
  </body>
</html>
[11:14] [hiseq.clinical@hasta:~] [S_base]  $

[henrikstranneheim]

@islean Thx! Ready for a review!

[islean]

LGTM!

[henrikstranneheim]

Deployed to prod:

Log deploy... done.
cg, version 64.4.18