Services&NiFi: updated Docker images to include Rust.

nifi/Dockerfile

@@ -36,15 +36,18 @@ RUN apt-add-repository restricted && \
     add-apt-repository ppa:graphics-drivers/ppa && \
     apt-get update && apt-get upgrade -y
 
-RUN apt-get install -y postgresql-server-dev-14 postgresql-server-dev-all python3-dev python3-pip python3.10-full ssl-cert python3-psycopg2 --no-install-recommends
+RUN apt-get install -y libsqlite3-dev postgresql-server-dev-14 postgresql-server-dev-all python3-dev python3-pip python3.10-full ssl-cert python3-psycopg2 --no-install-recommends
+
+# install rust, medcat requirement
+RUN curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh
 
 # timezone setting
 RUN apt-get install -y tzdata
 
 RUN pip3 install --upgrade pip && \
     pip3 install setuptools dvc flask GitPython elasticsearch opensearch-py neo4j eland --ignore-installed PyYAML && \ 
     pip3 install pytesseract ipyparallel py7zr cython isort html2text jsoncsv simplejson detect wheel nltk keras bokeh seaborn matplotlib graphviz plotly tqdm && \
-    pip3 install pymssql mysql-connector-python cx-Oracle dataclasses numpy matplotlib pandas dill jsonpickle jsonext psycopg2-binary python-certifi-win32 certifi pyodbc openpyxl
+    pip3 install pymssql mysql-connector-python cx-Oracle dataclasses numpy matplotlib pandas dill jsonpickle jsonext psycopg2-binary python-certifi-win32 certifi pyodbc openpyxl sqlite3
 
 # XNAT
 RUN pip3 install xnat
@@ -104,7 +107,7 @@ RUN rm jython-installer-2.7.3.jar
 
 RUN $JYTHON_HOME/bin/jython -m ensurepip
 RUN $JYTHON_HOME/bin/jython -m pip install --upgrade pip
-RUN $JYTHON_HOME/bin/jython -m pip install avro
+RUN $JYTHON_HOME/bin/jython -m pip install avro pysqlite3
 
 WORKDIR  /opt/nifi/nifi-toolkit-current/
 

services/jupyter-hub/Dockerfile_singleuser

@@ -50,6 +50,7 @@ RUN apt-get update && apt-get upgrade -y && \
     gnupg \
     ssl-cert \ 
     libevent-dev \
+    libsqlite3-dev \
     python3-dev \
     python3.10-dev \
     python3-all-dev \
@@ -115,6 +116,9 @@ RUN fix-permissions $CONDA_DIR && fix-permissions /home/$NB_USER
 # deps for psycopg2
 RUN apt-get install -y postgresql-server-dev-all --no-install-recommends 
 
+# install rust, medcat requirement
+RUN curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh
+
 # update pip and install basic utilities
 RUN pip3 install --upgrade pip
 RUN pip3 install setuptools wheel virtualenv

services/jupyter-hub/Dockerfile_singleuser_gpu

@@ -54,6 +54,7 @@ RUN apt-get update && apt-get upgrade -y && \
     apt-get install -y \
     gnupg \
     ssl-cert \ 
+    libsqlite3-dev \
     libevent-dev \
     python3-dev \
     python3.10-dev \
@@ -135,7 +136,10 @@ RUN conda clean --all -f -y
 RUN fix-permissions $CONDA_DIR && fix-permissions /home/$NB_USER
 
 # deps for psycopg2
-RUN apt-get install -y postgresql-server-dev-all --no-install-recommends 
+RUN apt-get install -y postgresql-server-dev-all --no-install-recommends
+
+# install rust, medcat requirement
+RUN curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh
 
 RUN pip3 install --upgrade pip
 RUN pip3 install setuptools wheel virtualenv cython