This repository contains Python code for data analysis tasks using popular libraries like Pandas, NumPy, and Matplotlib. The purpose of this project is to showcase different data analysis techniques and provide examples that can be used as a reference.
To get started, install anaconda in your system.
Clone this repository
git clone https://github.com/ColdMatter/pycaf.git
Then create a new environment using the command
conda create -f environment.yml
After creating the environment activate the environment using
conda activate pycaf
Navigate to the pycaf directory
cd \your_path\pycaf
Here install pycaf in editable mode using the command:
pip install -e .
The main libraries used in this project are:
- Pythonnet: Used for the python to C# bridge.
- NumPy: Used for numerical computing.
- Matplotlib: Used for creating visualizations.
- Plotly: Used for better interactive visualization.
If you find any issues or have suggestions for improvements, feel free to open an issue or submit a pull request. Contributions are welcome and encouraged!
This project is licensed under the MIT License - see the LICENSE file for details.
We would like to acknowledge the open-source community for creating and maintaining the essential Python libraries used in this project. Their efforts make data analysis with Python accessible and efficient for everyone.
{
"edmsuite_modules":
{
"MOTMaster":
{
"exe_path": "C:\\ControlPrograms\\EDMSuite\\MOTMaster\\bin\\CaFBEC\\MOTMaster.exe",
"remote_paths":
{
"bay_2": "tcp://localhost:1187/controller.rem",
"bay_3": "tcp://x.x.x.x:1187/controller.rem"
}
},
"WavemeterLock":
{
"exe_path": "C:\\ControlPrograms\\EDMSuite\\WavemeterLock\\bin\\CaFBEC\\WavemeterLock.exe",
"remote_paths":
{
"bay_2": "tcp://localhost:1234/controller.rem",
"bay_3": "tcp://x.x.x.x:5555/controller.rem"
},
"lasers":
{
"bay_2": ["v00", "BX", "v10", "v21", "v32"],
"bay_3": ["TCool"]
}
},
"CaFBECHadwareController":
{
"exe_path": "C:\\ControlPrograms\\EDMSuite\\CaFBECHadwareController\\bin\\CaFBEC\\CaFBECHadwareController.exe",
"remote_paths":
{
"bay_2": "tcp://localhost:1172/controller.rem"
}
},
"TransferCavityLock2012":
{
"exe_path": "C:\\ControlPrograms\\EDMSuite\\TransferCavityLock2012\\bin\\CaFBEC\\TransferCavityLock.exe",
"remote_paths":
{
"bay_2": "tcp://localhost:1190/controller.rem"
},
"lasers": {}
}
},
"edmsuite_dlls":
{
"daq": "C:\\ControlPrograms\\EDMSuite\\DAQ\\bin\\CaF\\DAQ.dll",
"shared_code": "C:\\ControlPrograms\\EDMSuite\\SharedCode\\bin\\CaFBEC\\SharedCode.dll"
},
"plugin_modules":
{
"picomotor":
{
"type": "pre",
"connect": false,
"defaults": {
"motor": "CMH",
"speed": 50,
"acceleration": 10,
"steps": 10,
"max_steps": 300
},
"motor_to_axis":
{
"FMH": 1,
"FMV": 2,
"CMH": 3,
"CMV": 4,
"Further Mirror Horizontal": 1,
"Further Mirror Vertical": 2,
"Closer Mirror Horizontal": 3,
"Closer Mirror Vertical": 4
}
},
"evalboard_ad9959": {},
"picoscope": {},
"pfeiffer":
{
"serial_port": "COM23",
"baud_rate": 9600,
"description": {
"1": "Source backing",
"2": "Science chamber backing",
"3": "Not In Use",
"4": "Source",
"5": "Beamline",
"6": "Science chamber"
}
},
"lakeshore":
{
"serial_port": "COM12",
"baud_rate": 57600,
"description": {
"0": "Cell",
"1": "4K",
"2": "SF6-4K",
"3": "40K",
"4": "SF6-40K",
"5": "Top Coil",
"6": "Jacket",
"7": "Cold head"
},
"sensor-id": {
"0": "A",
"1": "B",
"2": "C",
"3": "D1",
"4": "D2",
"5": "D3",
"6": "D4",
"7": "D5"
}
}
},
"script_root_path": "C:\\ControlPrograms\\EDMSuite\\BECMOTMasterScripts",
"data_root_path": "E:\\mot_master_data",
"temp_image_path": "C:\\Users\\cafmot\\Documents\\Temp_camera_images",
"temp_tof_path": "C:\\Users\\cafmot\\Documents\\ToF_Data",
"temp_wavemeter_info_path": "C:\\Users\\cafmot\\Documents\\ToF_Data",
"data_prefix": "CaFBEC",
"default_remote_path_id": "bay_2",
"constants":
{
"full_well_capacity": 140000.0,
"bits_per_channel": 16.0,
"gamma": 1.5e6,
"collection_solid_angle": 0.016,
"eta_q": 0.92,
"magnification": 1.42,
"pixel_size": 16e-6,
"photon_to_electron": 2.2,
"binning": 4,
"cs_exposure_time_parameter": "CameraTriggerDuration"
}
}import numpy as np
import datetime
import pycaf
today = datetime.date.today()
config_path = "C:\\ControlPrograms\\pycaf\\config_bec.json"
expt = pycaf.Experiment(config_path=config_path, interval=0.1)
probe = pycaf.Probe(config_path, today.year, today.month, today.day)expt.scan(
script="MOTBasic",
motmaster_parameters_with_values={
"yagONorOFF": [10.0, 1.0]
},
lasers_with_frequencies={
"v00": np.arange(494.431850, 494.431880, 0.000003).tolist()
},
n_iter=10
)probe.number_by_image(
0, 10, "CameraTriggerStart",
row_start=40, row_end=70,
col_start=40, col_end=70,
xscale=1e-2,
yscale=1.0,
xlabel="CameraTriggerStart [ms]",
ylabel="Molecule number",
display_images=True,
grid=False,
show_roi=False
)