unnecessary seed_pos variable removed

ComparativeGenomicsToolkit · Jul 12, 2020 · 3e14c3b · 3e14c3b
1 parent e994a21
commit 3e14c3b
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Showing 3 changed files with 3 additions and 4 deletions.
diff --git a/src/seed_filter.cu b/src/seed_filter.cu
@@ -926,7 +926,7 @@ void InclusivePrefixScan (uint32_t* data, uint32_t len) {
     }
 }
 
-void SendSeedPosTable (uint32_t* index_table, uint32_t index_table_size, uint32_t* pos_table, uint32_t num_index, uint32_t max_pos_index){
+void SendSeedPosTable (uint32_t* index_table, uint32_t index_table_size, uint32_t* pos_table, uint32_t num_index){
 
     for(int g = 0; g < NUM_DEVICES; g++){
 

diff --git a/src/seed_filter.h b/src/seed_filter.h
@@ -11,7 +11,7 @@ struct segment {
 
 typedef int(*InitializeProcessor_ptr)(int num_gpu, bool transition, uint32_t WGA_CHUNK, uint32_t input_seed_size, int* sub_mat, int input_xdrop, int input_hspthresh, bool input_noentropy);
 typedef void(*InclusivePrefixScan_ptr)(uint32_t* data, uint32_t len);
-typedef void(*SendSeedPosTable_ptr)(uint32_t* index_table, uint32_t index_table_size, uint32_t* pos_table, uint32_t ref_size, uint32_t max_pos_index);
+typedef void(*SendSeedPosTable_ptr)(uint32_t* index_table, uint32_t index_table_size, uint32_t* pos_table, uint32_t ref_size);
 typedef void(*SendRefWriteRequest_ptr)(size_t addr, uint32_t len);
 typedef void(*SendQueryWriteRequest_ptr)(size_t addr, uint32_t len, uint32_t buffer);
 typedef std::vector<segment> (*SeedAndFilter_ptr)(std::vector<uint64_t> seed_offset_vector, bool rev, uint32_t buffer);

diff --git a/src/seed_pos_table.cpp b/src/seed_pos_table.cpp
@@ -17,7 +17,6 @@ int SeedPosTable::GetShapeSize() {
 
 SeedPosTable::SeedPosTable(char* ref_str, size_t start_addr, uint32_t ref_length, std::string shape, uint32_t step) {
 
-    int max_pos = 0;
     shape_size_ = shape.length(); 
     int kmer_size = 0;
     for (int i = 0; i < shape_size_; i++) {
@@ -76,7 +75,7 @@ SeedPosTable::SeedPosTable(char* ref_str, size_t start_addr, uint32_t ref_length
             }
             });
 
-    g_SendSeedPosTable(index_table_+1, index_table_size_-1, pos_table_, num_index, max_pos);
+    g_SendSeedPosTable(index_table_+1, index_table_size_-1, pos_table_, num_index);
 
     free(tmp_index_arr);
     free(tmp_off_arr);
-Original file line number
+Diff line change
@@ Expand Up / @@ -926,7 +926,7 @@ void InclusivePrefixScan (uint32_t* data, uint32_t len) { @@
         }
     }
-    void SendSeedPosTable (uint32_t* index_table, uint32_t index_table_size, uint32_t* pos_table, uint32_t num_index, uint32_t max_pos_index){
+    void SendSeedPosTable (uint32_t* index_table, uint32_t index_table_size, uint32_t* pos_table, uint32_t num_index){
         for(int g = 0; g < NUM_DEVICES; g++){
@@ Expand Down @@