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@Computational-Genomics-BSC

Computational Genomics (BSC-CNS)

Computational Genomics group in Life Sciences department at Barcelona Supercomputing Center – Centro Nacional de Supercomputación (BSC-CNS)

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  1. plink-bed-reader plink-bed-reader Public

    Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in pure Python.

    Python 2

  2. GenomeVariator GenomeVariator Public

    Tool for adding genomic variants to an existing genome (in SAM/BAM/CRAM format). Currently supported variants are SNVs, indels and SVs (insertions, deletions, translocations, inversions and duplica…

    Python 1 1

  3. GenomeMosaicMaker GenomeMosaicMaker Public

    Tool for copying read-alignments regions centered around variants (in VCF/VCF.GZ/BCF format) from existing genomes (in SAM/BAM/CRAM format) to insert them into canvas genomes (in SAM/BAM/CRAM format).

    Python 1 1

  4. GenomeAnonymizer GenomeAnonymizer Public

    Python

Repositories

Showing 4 of 4 repositories
  • Computational-Genomics-BSC/GenomeAnonymizer’s past year of commit activity
    Python 0 0 1 0 Updated Oct 1, 2024
  • GenomeMosaicMaker Public

    Tool for copying read-alignments regions centered around variants (in VCF/VCF.GZ/BCF format) from existing genomes (in SAM/BAM/CRAM format) to insert them into canvas genomes (in SAM/BAM/CRAM format).

    Computational-Genomics-BSC/GenomeMosaicMaker’s past year of commit activity
    Python 1 1 0 0 Updated Sep 12, 2024
  • GenomeVariator Public

    Tool for adding genomic variants to an existing genome (in SAM/BAM/CRAM format). Currently supported variants are SNVs, indels and SVs (insertions, deletions, translocations, inversions and duplications). It generates realistic genomes as almost always less than 99% of the original real genome is modified.

    Computational-Genomics-BSC/GenomeVariator’s past year of commit activity
    Python 1 1 0 0 Updated Sep 12, 2024
  • plink-bed-reader Public

    Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in pure Python.

    Computational-Genomics-BSC/plink-bed-reader’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Jul 3, 2024

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