ci: install lme4

DC-analysis · Sep 13, 2024 · 91342d7 · 91342d7
1 parent c5ee9a5
commit 91342d7
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Showing 2 changed files with 4 additions and 5 deletions.
diff --git a/.github/workflows/check.yml b/.github/workflows/check.yml
@@ -47,6 +47,7 @@ jobs:
       run: |
         pip install -e .[all]
         pip install -r tests/requirements.txt
+        python -c "from dclab.lme4 import rsetup; rsetup.require_lme4()"
     - name: Install dclab with DCOR dependencies
       if: matrix.extras == 'dcor-s3'
       run: |

diff --git a/dclab/lme4/wrapr.py b/dclab/lme4/wrapr.py
@@ -1,8 +1,8 @@
 """R lme4 wrapper"""
+import logging
 import numbers
 import pathlib
 import tempfile
-import warnings
 
 import importlib_resources
 import numpy as np
@@ -13,8 +13,7 @@
 from . import rsetup
 
 
-class Lme4InstallWarning(UserWarning):
-    pass
+logger = logging.getLogger(__name__)
 
 
 class Rlme4(object):
@@ -44,8 +43,7 @@ def __init__(self, model="lmer", feature="deform"):
 
         # Make sure that lme4 is available
         if not rsetup.has_lme4():
-            warnings.warn("Installing lme4, this may take a while!",
-                          Lme4InstallWarning)
+            logger.info("Installing lme4, this may take a while!")
             rsetup.require_lme4()
 
     def add_dataset(self, ds, group, repetition):