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ci: cleanup, leave it to the R devs
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paulmueller committed Oct 27, 2023
1 parent 50539b2 commit c91c4ec
Showing 1 changed file with 4 additions and 13 deletions.
17 changes: 4 additions & 13 deletions .github/workflows/check.yml
Original file line number Diff line number Diff line change
Expand Up @@ -29,16 +29,6 @@ jobs:
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Symlink gfortran (macOS)
if: runner.os == 'macOS'
run: |
# make sure gfortran is available
# https://github.com/actions/virtual-environments/issues/2524
# https://github.com/cbg-ethz/dce/blob/master/.github/workflows/pkgdown.yaml
sudo ln -s /usr/local/bin/gfortran-11 /usr/local/bin/gfortran
sudo mkdir /usr/local/gfortran
sudo ln -s /usr/local/Cellar/gcc@11/*/lib/gcc/11 /usr/local/gfortran/lib
gfortran --version
- name: Install dependencies
run: |
# prerequisites
Expand All @@ -52,13 +42,14 @@ jobs:
python -m pip install rpy2==3.5.12
- name: install R
if: matrix.extras == 'all'
uses: r-lib/actions/setup-r@v2.6.5
uses: r-lib/actions/setup-r@v2
with:
r-version: '3.6.3'
- name: install lme4
if: matrix.extras == 'all'
run: |
R -e "install.packages('lme4', repos='http://cran.r-project.org')"
uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::lme4
- name: Install dclab with all possible dependencies
if: matrix.extras == 'all'
run: |
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