Add geometry checking to cmesh commit #2683
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| name: t8code tests linkage parallel debug | |
| # This file is part of t8code. | |
| # t8code is a C library to manage a collection (a forest) of multiple | |
| # connected adaptive space-trees of general element types in parallel. | |
| # | |
| # Copyright (C) 2015 the developers | |
| # | |
| # t8code is free software; you can redistribute it and/or modify | |
| # it under the terms of the GNU General Public License as published by | |
| # the Free Software Foundation; either version 2 of the License, or | |
| # (at your option) any later version. | |
| # | |
| # t8code is distributed in the hope that it will be useful, | |
| # but WITHOUT ANY WARRANTY; without even the implied warranty of | |
| # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
| # GNU General Public License for more details. | |
| # | |
| # You should have received a copy of the GNU General Public License | |
| # along with t8code; if not, write to the Free Software Foundation, Inc., | |
| # 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. | |
| # | |
| # This github CI script installs t8code and runs its tests for various configurations. | |
| # We compile sc and p4est as thirdparty libraries and use caching to only trigger a | |
| # new installation of them when their versions have changed in t8code. | |
| # | |
| # Note: To manually enforce sc and p4est installation, either increase the counter | |
| # in the "key:" entries of the sc and p4est steps or set the variables | |
| # SC_IGNORE_CACHE and P4EST_IGNORE_CACHE to 1 in the respective steps. | |
| env: | |
| MAKEFLAGS: "-j2 V=0" | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - develop | |
| - feature-*CI* # for testing this script, all feature branches with "CI" in their name | |
| pull_request: | |
| branches: | |
| - main | |
| - develop | |
| workflow_dispatch: # Be able to trigger this manually on github.com | |
| # Run every night at 1:10 | |
| schedule: | |
| - cron: '10 1 * * *' | |
| jobs: | |
| build: | |
| if: (github.event_name == 'schedule' && github.repository == 'DLR-AMR/t8code') || (github.event_name != 'schedule') | |
| runs-on: ubuntu-latest | |
| container: dlramr/t8code-ubuntu:t8-dependencies | |
| timeout-minutes: 90 | |
| steps: | |
| # | |
| # Setup and bootstrap | |
| # | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-tags: true # required to get version tags | |
| fetch-depth: 0 # required to get all history, especially the version tags | |
| - name: install sudo | |
| run: apt update && apt install sudo | |
| # On the github Ubuntu 20.04, sudo is not available by default | |
| # we need it, however, to update/upgrade our packages. | |
| - name: Update packages | |
| run: sudo apt-get update && sudo apt-get upgrade -y | |
| # This step is necessary to get the newest package data | |
| - name: disable ownership checks | |
| run: git config --global --add safe.directory '*' | |
| - name: init submodules | |
| run: git submodule init | |
| - name: update submodules | |
| run: git submodule update | |
| - name: bootstrap | |
| run: ./bootstrap | |
| # | |
| # SC installation | |
| # | |
| - name: store sc folders in var | |
| run: echo SC_DEBUG=$PWD/sc/build_debug >> $GITHUB_ENV | |
| - name: Get sc commit hash | |
| run: hash=`git rev-parse HEAD:sc` && echo sc_commit=$hash >> $GITHUB_ENV | |
| - name: Check cache for previous sc installation | |
| id: sc_cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ${{ env.SC_DEBUG }} | |
| # You can increase the counter at the end to force a new key and hence recomputing the cache | |
| key: sc-${{ env.sc_commit }}-004 | |
| - name: Set ignore cache variable | |
| # If this variable is set 1 | |
| # (i.e. SC_IGNORE_CACHE=1) then the cache will be ignored and | |
| # sc is always build. | |
| # We use this mostly for debugging this CI script. | |
| run: echo SC_IGNORE_CACHE=0 >> $GITHUB_ENV | |
| - name: Cache info | |
| if: ${{ steps.sc_cache.outputs.cache-hit != 'true' || env.SC_IGNORE_CACHE == 1 }} | |
| run: echo No cache found or cache will be ignored. SC_IGNORE_CACHE=$SC_IGNORE_CACHE | |
| - name: if ignore cache, delete folders | |
| if: ${{ env.SC_IGNORE_CACHE == 1 }} | |
| # The true at the end is to ignore errors that i.e. occur when the folders do not exist | |
| run: rm -r $SC_DEBUG $SC_RELEASE $SC_SERIAL_DEBUG $SC_SERIAL_RELEASE || true | |
| - name: make folder | |
| run: mkdir $SC_DEBUG | |
| if: ${{ steps.sc_cache.outputs.cache-hit != 'true' || env.SC_IGNORE_CACHE == 1 }} | |
| - name: install sc | |
| run: echo "Install sc" | |
| if: ${{ steps.sc_cache.outputs.cache-hit != 'true' || env.SC_IGNORE_CACHE == 1 }} | |
| ## sc debug | |
| - name: sc configure debug | |
| run: cd $SC_DEBUG && ../configure --enable-mpi --enable-debug --prefix=$PWD/install | |
| if: ${{ steps.sc_cache.outputs.cache-hit != 'true' || env.SC_IGNORE_CACHE == 1 }} | |
| - name: sc build debug | |
| run: cd $SC_DEBUG && make $MAKEFLAGS && make $MAKEFLAGS install | |
| if: ${{ steps.sc_cache.outputs.cache-hit != 'true' || env.SC_IGNORE_CACHE == 1 }} | |
| # | |
| # P4EST | |
| # | |
| - name: store p4est folders in var | |
| run: echo P4EST_DEBUG=$PWD/p4est/build_debug >> $GITHUB_ENV | |
| - name: Get p4est commit hash | |
| run: hash=`git rev-parse HEAD:p4est` && echo p4est_commit=$hash >> $GITHUB_ENV | |
| - name: Check cache for previous p4est installation | |
| id: p4est_cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ${{ env.P4EST_DEBUG }} | |
| # You can increase the counter at the end to force a new key and hence recomputing the cache | |
| key: p4est-${{ env.p4est_commit }}-004 | |
| - name: Set ignore cache variable | |
| # If this variable is set to 1 then the cache is ignored and p4est is installed regardless of cache. | |
| # (set with i.e. P4EST_IGNORE_CACHE=1) | |
| # We use this mostly for debugging this CI script. | |
| run: echo P4EST_IGNORE_CACHE=0 >> $GITHUB_ENV | |
| - name: Cache info | |
| if: ${{ steps.sc_cache.outputs.cache-hit != 'true' || env.P4EST_IGNORE_CACHE == 1 }} | |
| run: echo No cache found or cache will be ignored. P4EST_IGNORE_CACHE=$P4EST_IGNORE_CACHE | |
| - name: install p4est | |
| run: echo "Install p4est" | |
| if: ${{ steps.p4est_cache.outputs.cache-hit != 'true' || env.P4EST_IGNORE_CACHE == 1 }} | |
| - name: if ignore cache, delete folders | |
| if: ${{ env.P4EST_IGNORE_CACHE == 1 }} | |
| # The true at the end is to ignore errors that i.e. occur when the folders do not exist | |
| run: rm -r $P4EST_DEBUG $P4EST_RELEASE $P4EST_SERIAL_DEBUG $P4EST_SERIAL_RELEASE || true | |
| - name: make folder | |
| run: mkdir $P4EST_DEBUG | |
| ## p4est debug | |
| if: ${{ steps.p4est_cache.outputs.cache-hit != 'true' || env.P4EST_IGNORE_CACHE == 1 }} | |
| - name: p4est configure debug | |
| run: cd $P4EST_DEBUG && ../configure --enable-mpi --enable-debug --prefix=$PWD/install --with-sc=$SC_DEBUG/install | |
| if: ${{ steps.p4est_cache.outputs.cache-hit != 'true' || env.P4EST_IGNORE_CACHE == 1 }} | |
| - name: p4est build debug | |
| run: cd $P4EST_DEBUG && make $MAKEFLAGS && make $MAKEFLAGS install | |
| if: ${{ steps.p4est_cache.outputs.cache-hit != 'true' || env.P4EST_IGNORE_CACHE == 1 }} | |
| # P4EST AND SC END | |
| # | |
| # T8CODE | |
| # | |
| # | |
| # build config vars | |
| - name: build CFLAGS and CXXFLAGS variables | |
| run: echo CFLAGS_var="-Wall -pedantic -O0" >> $GITHUB_ENV | |
| && echo CXXFLAGS_var="-Wall -pedantic -O0" >> $GITHUB_ENV | |
| # Note: We want to use '-Werror', but if we already provide it at the configure step | |
| # we get errors in configure that we cannot remove (for example the autotools way | |
| # of checking for libm results in a compiler warning). | |
| # Thus, we add '-Werror' later at the make step. | |
| - name: less-test-option | |
| if: github.event_name == 'pull_request' | |
| run: export LESS_TEST_OPTION="--enable-less-tests" | |
| && echo LESS_TEST_OPTION="$LESS_TEST_OPTION" >> $GITHUB_ENV | |
| - name: build config variables | |
| run: export CONFIG_OPTIONS="--without-blas ${LESS_TEST_OPTION}" | |
| && export CONFIG_DEBUG="$CONFIG_OPTIONS --enable-debug --enable-mpi --with-sc=$SC_DEBUG/install --with-p4est=$P4EST_DEBUG/install" | |
| && echo CONFIG_OPTIONS="$CONFIG_OPTIONS" >> $GITHUB_ENV | |
| && echo CONFIG_DEBUG="$CONFIG_DEBUG" >> $GITHUB_ENV | |
| - name: Check vars | |
| run: echo "[$CONFIG_DEBUG]" | |
| # configure and test with MPI and netcdf (debug mode) | |
| - name: check NetCDF | |
| run: echo "Checking NetCDF with MPI in debugging mode" | |
| - name: configure MPI NetCDF debug | |
| run: mkdir build_netcdf && cd build_netcdf && ../configure $CONFIG_DEBUG --with-netcdf CFLAGS="$CFLAGS_var" CXXFLAGS="$CXXFLAGS_var" | |
| - name: OnFailUploadLog | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: config_netcdf_debug_MPI.log | |
| path: build_netcdf/config.log | |
| - name: make | |
| run: cd build_netcdf && make $MAKEFLAGS CFLAGS="$CFLAGS_var -Werror" CXXFLAGS="$CXXFLAGS_var -Werror" | |
| - name: make install | |
| run: cd build_netcdf && make install $MAKEFLAGS | |
| - name: make check | |
| run: cd build_netcdf && make check $MAKEFLAGS CFLAGS="$CFLAGS_var -Werror" CXXFLAGS="$CXXFLAGS_var -Werror" | |
| - name: OnFailUploadLog | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-suite_netcdf.log | |
| path: build_netcdf/test-suite.log | |
| # configure and test with MPI and OpenCASCADE (debug mode) | |
| - name: check OpenCASCADE | |
| run: echo "Checking OpenCASCADE with MPI in debugging mode" | |
| - name: configure MPI OpenCASCADE debug | |
| run: mkdir build_cad && cd build_cad && ../configure $CONFIG_DEBUG --with-occ CFLAGS="$CFLAGS_var -I/usr/include/opencascade" CXXFLAGS="$CXXFLAGS_var -I/usr/include/opencascade" | |
| - name: OnFailUploadLog | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: config_cad_debug_MPI.log | |
| path: build_cad/config.log | |
| - name: make | |
| run: cd build_cad && make $MAKEFLAGS CFLAGS="$CFLAGS_var -Werror -I/usr/include/opencascade" CXXFLAGS="$CXXFLAGS_var -Werror -I/usr/include/opencascade" | |
| - name: make install | |
| run: cd build_cad && make install $MAKEFLAGS | |
| - name: make check | |
| run: cd build_cad && make check $MAKEFLAGS CFLAGS="$CFLAGS_var -Werror -I/usr/include/opencascade" CXXFLAGS="$CXXFLAGS_var -Werror -I/usr/include/opencascade" | |
| - name: OnFailUploadLog | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-suite_cad.log | |
| path: build_cad/test-suite.log | |
| # configure and test with MPI and VTK (debug mode) | |
| - name: check VTK | |
| run: echo "Checking VTK with MPI in debugging mode" | |
| - name: configure MPI VTK debug | |
| run: mkdir build_vtk && cd build_vtk && ../configure $CONFIG_DEBUG --with-vtk --with-vtk_version_number=9.1 CFLAGS="$CFLAGS_var -isystem/usr/local/include/vtk-9.1" CXXFLAGS="$CXXFLAGS_var -isystem/usr/local/include/vtk-9.1" | |
| - name: OnFailUploadLog | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: config_vtk_debug_MPI.log | |
| path: build_vtk/config.log | |
| - name: make | |
| run: cd build_vtk && make $MAKEFLAGS CFLAGS="$CFLAGS_var -Werror -isystem/usr/local/include/vtk-9.1" CXXFLAGS="$CXXFLAGS_var -Werror -isystem/usr/local/include/vtk-9.1" | |
| - name: make install | |
| run: cd build_vtk && make install $MAKEFLAGS | |
| - name: make check | |
| run: cd build_vtk && make check $MAKEFLAGS CFLAGS="$CFLAGS_var -Werror -isystem/usr/local/include/vtk-9.1" CXXFLAGS="$CXXFLAGS_var -Werror -isystem/usr/local/include/vtk-9.1" | |
| - name: OnFailUploadLog | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-suite_vtk.log | |
| path: build_vtk/test-suite.log |