Feature

- Improved Error message for proteins in clustering from undeclared proteomes in SpeciesClassification file
DRL · Mar 13, 2017 · d4bc9cb · d4bc9cb
1 parent 360b723
commit d4bc9cb
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/kinfin.py b/kinfin.py
@@ -1900,8 +1900,8 @@ def __init__(self, cluster_id, protein_ids):
         self.protein_count = len(protein_ids)
         try:
             self.proteomes_by_protein_id = {protein_id : proteinCollection.proteinObjs_by_protein_id[protein_id].proteome_id for protein_id in protein_ids}
-        except KeyError:
-            sys.exit("[ERROR] - Proteins in clustering belong to proteomes that are not present in the SpeciesClassification-file. Please add those proteoemes or recluster by omitting these proteomes.")
+        except KeyError as e:
+            sys.exit("[ERROR] - Protein %s in clustering belong to proteomes that are not present in the SpeciesClassification-file. Please add those proteoemes or recluster by omitting these proteomes." % (e.args[0]))
 
         self.proteome_ids_list = self.proteomes_by_protein_id.values()
         self.protein_count_by_proteome_id = Counter(self.proteome_ids_list)