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Extract sequences from a fasta or fastq file based on their length

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DamienFr/Extract_seq_based_on_length

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Description

Extract sequences from a fasta or fastq file based on their length

Usage

perl Extract_fasta_or_fastq_sequence_based_on_size.pl -i in.fasta|.fa|.fastq|.fq -s 100 -t superior [-o output_file]

Options

-i or -input:	fasta or fastq file	(REQUIRED)
-s or -size:	Filtering size (REQUIRED)
-t or -type:	superior/inferior . Sizes to KEEP relative to the filtering size (REQUIRED)
-o or -out:	Output File	(DEFAULT: [input_name].size.filtered)
-h or -help:	This Documentation

Author

Damien Richard, 2019

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Extract sequences from a fasta or fastq file based on their length

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