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@DataBiosphere

Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

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  1. toil toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    Python 892 241

  2. dsub dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    Python 262 44

  3. terra-ui terra-ui Public

    Web user interface for the Terra platform

    TypeScript 52 22

  4. leonardo leonardo Public

    Notebook service

    Scala 43 21

  5. terra-docker terra-docker Public

    Jupyter Notebook 27 35

  6. job-manager job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    TypeScript 26 5

Repositories

Showing 10 of 159 repositories
  • azul Public

    Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

    DataBiosphere/azul’s past year of commit activity
    Python 6 Apache-2.0 2 706 17 Updated Sep 10, 2024
  • toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    DataBiosphere/toil’s past year of commit activity
    Python 892 Apache-2.0 241 386 (1 issue needs help) 17 Updated Sep 10, 2024
  • findable-ui Public
    DataBiosphere/findable-ui’s past year of commit activity
    TypeScript 1 Apache-2.0 0 8 1 Updated Sep 10, 2024
  • terra-ui Public

    Web user interface for the Terra platform

    DataBiosphere/terra-ui’s past year of commit activity
    TypeScript 52 BSD-3-Clause 22 145 16 Updated Sep 10, 2024
  • tanagra Public

    Repo for the Tanagra service being developed by the All of Us DRC

    DataBiosphere/tanagra’s past year of commit activity
    Java 2 BSD-3-Clause 1 0 14 Updated Sep 9, 2024
  • terra-scientific-pipelines-service Public
    DataBiosphere/terra-scientific-pipelines-service’s past year of commit activity
    Java 0 BSD-3-Clause 0 0 3 Updated Sep 9, 2024
  • consent-ontology Public

    Broad Institute Data Use Oversight System

    DataBiosphere/consent-ontology’s past year of commit activity
    Java 7 BSD-3-Clause 0 0 1 Updated Sep 10, 2024
  • terra-docker Public
    DataBiosphere/terra-docker’s past year of commit activity
    Jupyter Notebook 27 BSD-3-Clause 35 21 9 Updated Sep 9, 2024
  • jade-data-repo Public

    The Terra Data Repository built by the Jade team.

    DataBiosphere/jade-data-repo’s past year of commit activity
    Java 13 BSD-3-Clause 5 0 22 Updated Sep 9, 2024
  • terra-java-project-template Public template
    DataBiosphere/terra-java-project-template’s past year of commit activity
    Java 4 BSD-3-Clause 1 0 2 Updated Sep 9, 2024
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