Merge pull request #410 from DataverseLabs/dev

Dev
DataverseLabs · Sep 17, 2023 · 7702435 · 7702435
2 parents 2985322 + e8753e9
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diff --git a/changelog.rst b/changelog.rst
@@ -6,6 +6,13 @@ Pyinterpolate is the Python library for **geostatistics** and **spatial statisti
 Changes by date
 ===============
 
+2023-09-16
+----------
+
+**version 0.5.0.post1**
+
+* (debug) `hdbscan` is removed from requirements, cluster detection algorithms are blocked, and those will be reimplemented in the closest future. The `HDBSCAN` package breaks installation of the package.
+
 2023-08-29
 ----------
 

diff --git a/docs/build/doctrees/api/distance/distance.doctree b/docs/build/doctrees/api/distance/distance.doctree
diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
diff --git a/docs/build/doctrees/index.doctree b/docs/build/doctrees/index.doctree
diff --git a/docs/build/doctrees/usage/tutorials/A21-Directional-Semivariogram.doctree b/docs/build/doctrees/usage/tutorials/A21-Directional-Semivariogram.doctree
diff --git a/docs/build/html/_modules/index.html b/docs/build/html/_modules/index.html
@@ -411,8 +411,7 @@
                 <article class="bd-article" role="main">
 
   <h1>All modules for which code is available</h1>
-<ul><li><a href="pyinterpolate/distance/clusters.html">pyinterpolate.distance.clusters</a></li>
-<li><a href="pyinterpolate/distance/distance.html">pyinterpolate.distance.distance</a></li>
+<ul><li><a href="pyinterpolate/distance/distance.html">pyinterpolate.distance.distance</a></li>
 <li><a href="pyinterpolate/distance/gridding.html">pyinterpolate.distance.gridding</a></li>
 <li><a href="pyinterpolate/idw/idw.html">pyinterpolate.idw.idw</a></li>
 <li><a href="pyinterpolate/io/read_data.html">pyinterpolate.io.read_data</a></li>

diff --git a/docs/build/html/_modules/pyinterpolate/variogram/indicator/indicator_variogram.html b/docs/build/html/_modules/pyinterpolate/variogram/indicator/indicator_variogram.html
@@ -1,5 +1,4 @@
 
-
 <!DOCTYPE html>
 
 
@@ -8,7 +7,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>pyinterpolate.variogram.indicator.indicator_variogram &#8212; Pyinterpolate 0.5 documentation</title>
+    <title>pyinterpolate.variogram.indicator.indicator_variogram &#8212; Pyinterpolate 0.5.0 documentation</title>
 
 
 
@@ -28,21 +27,18 @@
 <link rel="preload" as="font" type="font/woff2" crossorigin href="../../../../_static/vendor/fontawesome/6.1.2/webfonts/fa-brands-400.woff2" />
 <link rel="preload" as="font" type="font/woff2" crossorigin href="../../../../_static/vendor/fontawesome/6.1.2/webfonts/fa-regular-400.woff2" />
 
-    <link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../../../_static/copybutton.css" />
+    <link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css?v=a746c00c" />
+    <link rel="stylesheet" type="text/css" href="../../../../_static/copybutton.css?v=76b2166b" />
 
   <!-- Pre-loaded scripts that we'll load fully later -->
   <link rel="preload" as="script" href="../../../../_static/scripts/bootstrap.js?digest=e353d410970836974a52" />
 <link rel="preload" as="script" href="../../../../_static/scripts/pydata-sphinx-theme.js?digest=e353d410970836974a52" />
 
-    <script data-url_root="../../../../" id="documentation_options" src="../../../../_static/documentation_options.js"></script>
-    <script src="../../../../_static/jquery.js"></script>
-    <script src="../../../../_static/underscore.js"></script>
-    <script src="../../../../_static/_sphinx_javascript_frameworks_compat.js"></script>
-    <script src="../../../../_static/doctools.js"></script>
-    <script src="../../../../_static/sphinx_highlight.js"></script>
-    <script src="../../../../_static/clipboard.min.js"></script>
-    <script src="../../../../_static/copybutton.js"></script>
+    <script src="../../../../_static/documentation_options.js?v=70f82a29"></script>
+    <script src="../../../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
+    <script src="../../../../_static/clipboard.min.js?v=a7894cd8"></script>
+    <script src="../../../../_static/copybutton.js?v=f281be69"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/pyinterpolate/variogram/indicator/indicator_variogram';</script>
     <link rel="index" title="Index" href="../../../../genindex.html" />
@@ -108,7 +104,7 @@
 
 
 
-    <p class="title logo__title">Pyinterpolate 0.5 documentation</p>
+    <p class="title logo__title">Pyinterpolate 0.5.0 documentation</p>
 
 </a></div>
 
@@ -432,7 +428,9 @@ <h1>Source code for pyinterpolate.variogram.indicator.indicator_variogram</h1><d
 <span class="kn">from</span> <span class="nn">pyinterpolate.variogram.theoretical.semivariogram</span> <span class="kn">import</span> <span class="n">TheoreticalVariogram</span>
 
 
-<div class="viewcode-block" id="IndicatorVariogramData"><a class="viewcode-back" href="../../../../api/variogram/indicator/indicator.html#pyinterpolate.IndicatorVariogramData">[docs]</a><span class="k">class</span> <span class="nc">IndicatorVariogramData</span><span class="p">:</span>
+<div class="viewcode-block" id="IndicatorVariogramData">
+<a class="viewcode-back" href="../../../../api/variogram/indicator/indicator.html#pyinterpolate.IndicatorVariogramData">[docs]</a>
+<span class="k">class</span> <span class="nc">IndicatorVariogramData</span><span class="p">:</span>
 <span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Class describes indicator variogram data.</span>
 
@@ -477,7 +475,10 @@ <h1>Source code for pyinterpolate.variogram.indicator.indicator_variogram</h1><d
         <span class="bp">self</span><span class="o">.</span><span class="n">ids</span> <span class="o">=</span> <span class="n">code_indicators</span><span class="p">(</span><span class="n">input_array</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">thresholds</span><span class="p">)</span></div>
 
 
-<div class="viewcode-block" id="ExperimentalIndicatorVariogram"><a class="viewcode-back" href="../../../../api/variogram/indicator/indicator.html#pyinterpolate.ExperimentalIndicatorVariogram">[docs]</a><span class="k">class</span> <span class="nc">ExperimentalIndicatorVariogram</span><span class="p">:</span>
+
+<div class="viewcode-block" id="ExperimentalIndicatorVariogram">
+<a class="viewcode-back" href="../../../../api/variogram/indicator/indicator.html#pyinterpolate.ExperimentalIndicatorVariogram">[docs]</a>
+<span class="k">class</span> <span class="nc">ExperimentalIndicatorVariogram</span><span class="p">:</span>
 <span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Class describes Experimental Indicator Variogram models.</span>
 
@@ -591,7 +592,9 @@ <h1>Source code for pyinterpolate.variogram.indicator.indicator_variogram</h1><d
         <span class="k">if</span> <span class="n">fit</span><span class="p">:</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">fit</span><span class="p">()</span>
 
-<div class="viewcode-block" id="ExperimentalIndicatorVariogram.fit"><a class="viewcode-back" href="../../../../api/variogram/indicator/indicator.html#pyinterpolate.ExperimentalIndicatorVariogram.fit">[docs]</a>    <span class="k">def</span> <span class="nf">fit</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<div class="viewcode-block" id="ExperimentalIndicatorVariogram.fit">
+<a class="viewcode-back" href="../../../../api/variogram/indicator/indicator.html#pyinterpolate.ExperimentalIndicatorVariogram.fit">[docs]</a>
+    <span class="k">def</span> <span class="nf">fit</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
 <span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Function fits indicators to models and updates class models.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
@@ -610,7 +613,10 @@ <h1>Source code for pyinterpolate.variogram.indicator.indicator_variogram</h1><d
             <span class="p">)</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">experimental_models</span><span class="p">[</span><span class="nb">str</span><span class="p">(</span><span class="n">indicator</span><span class="p">)]</span> <span class="o">=</span> <span class="n">exp</span></div>
 
-<div class="viewcode-block" id="ExperimentalIndicatorVariogram.show"><a class="viewcode-back" href="../../../../api/variogram/indicator/indicator.html#pyinterpolate.ExperimentalIndicatorVariogram.show">[docs]</a>    <span class="k">def</span> <span class="nf">show</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+
+<div class="viewcode-block" id="ExperimentalIndicatorVariogram.show">
+<a class="viewcode-back" href="../../../../api/variogram/indicator/indicator.html#pyinterpolate.ExperimentalIndicatorVariogram.show">[docs]</a>
+    <span class="k">def</span> <span class="nf">show</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
 <span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Function shows generated experimental variograms for each indicator.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
@@ -624,10 +630,14 @@ <h1>Source code for pyinterpolate.variogram.indicator.indicator_variogram</h1><d
         <span class="n">plt</span><span class="o">.</span><span class="n">legend</span><span class="p">(</span><span class="n">legend</span><span class="p">)</span>
         <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;Distance&#39;</span><span class="p">)</span>
         <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;Semivariance&#39;</span><span class="p">)</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span></div></div>
+        <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span></div>
+</div>
 
 
-<div class="viewcode-block" id="IndicatorVariograms"><a class="viewcode-back" href="../../../../api/variogram/indicator/indicator.html#pyinterpolate.IndicatorVariograms">[docs]</a><span class="k">class</span> <span class="nc">IndicatorVariograms</span><span class="p">:</span>
+
+<div class="viewcode-block" id="IndicatorVariograms">
+<a class="viewcode-back" href="../../../../api/variogram/indicator/indicator.html#pyinterpolate.IndicatorVariograms">[docs]</a>
+<span class="k">class</span> <span class="nc">IndicatorVariograms</span><span class="p">:</span>
 <span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Class models indicator variograms for all indices.</span>
 
@@ -658,7 +668,9 @@ <h1>Source code for pyinterpolate.variogram.indicator.indicator_variogram</h1><d
         <span class="bp">self</span><span class="o">.</span><span class="n">experimental_indicator_variogram</span> <span class="o">=</span> <span class="n">experimental_indicator_variogram</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">theoretical_indicator_variograms</span> <span class="o">=</span> <span class="p">{}</span>
 
-<div class="viewcode-block" id="IndicatorVariograms.fit"><a class="viewcode-back" href="../../../../api/variogram/indicator/indicator.html#pyinterpolate.IndicatorVariograms.fit">[docs]</a>    <span class="k">def</span> <span class="nf">fit</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
+<div class="viewcode-block" id="IndicatorVariograms.fit">
+<a class="viewcode-back" href="../../../../api/variogram/indicator/indicator.html#pyinterpolate.IndicatorVariograms.fit">[docs]</a>
+    <span class="k">def</span> <span class="nf">fit</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
             <span class="n">model_name</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s1">&#39;linear&#39;</span><span class="p">,</span>
             <span class="n">nugget</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span>
             <span class="n">rang</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
@@ -799,7 +811,10 @@ <h1>Source code for pyinterpolate.variogram.indicator.indicator_variogram</h1><d
                          <span class="n">return_params</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">theoretical_indicator_variograms</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span> <span class="o">=</span> <span class="n">theo</span></div>
 
-<div class="viewcode-block" id="IndicatorVariograms.show"><a class="viewcode-back" href="../../../../api/variogram/indicator/indicator.html#pyinterpolate.IndicatorVariograms.show">[docs]</a>    <span class="k">def</span> <span class="nf">show</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subplots</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">):</span>
+
+<div class="viewcode-block" id="IndicatorVariograms.show">
+<a class="viewcode-back" href="../../../../api/variogram/indicator/indicator.html#pyinterpolate.IndicatorVariograms.show">[docs]</a>
+    <span class="k">def</span> <span class="nf">show</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subplots</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">):</span>
 <span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Method plots experimental and theoretical variograms.</span>
 
@@ -868,7 +883,9 @@ <h1>Source code for pyinterpolate.variogram.indicator.indicator_variogram</h1><d
                 <span class="n">_marker_idx</span> <span class="o">=</span> <span class="n">_marker_idx</span> <span class="o">+</span> <span class="mi">1</span>
             <span class="n">plt</span><span class="o">.</span><span class="n">legend</span><span class="p">(</span><span class="n">legend</span><span class="p">)</span>
 
-        <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span></div></div>
+        <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span></div>
+</div>
+
 </pre></div>
 
                 </article>
@@ -921,7 +938,7 @@ <h1>Source code for pyinterpolate.variogram.indicator.indicator_variogram</h1><d
 
         <div class="footer-item">
   <p class="sphinx-version">
-    Created using <a href="https://www.sphinx-doc.org/">Sphinx</a> 5.3.0.
+    Created using <a href="https://www.sphinx-doc.org/">Sphinx</a> 7.2.4.
     <br/>
   </p>
 </div>