Warning: This analysis is a work in progress. Breaking changes may occur and the authors cannot guarantee support.
Update all nowcasts and deploy the website with the following:
bash bin/update_nowcasts.sh
This analysis was developed in a docker container based on the rocker/geospatial
docker image.
To build the docker image run (from the covid
directory):
docker build . -t covid
To run the docker image run:
docker run -d -p 8787:8787 --name covid -e USER=covid -e PASSWORD=covid covid
The RStudio client can be found on port :8787 at your local machines ip. The default username:password is time_vary:time_vary, set the user with -e USER=username, and the password with - e PASSWORD=newpasswordhere. The default is to save the analysis files into the user directory.
To mount a folder (from your current working directory - here assumed to be tmp
) in the docker container to your local system use the following in the above docker run command (as given mounts the whole covid
directory to tmp
).
--mount type=bind,source=$(pwd)/tmp,target=/home/covid
To access the command line run the following:
docker exec -ti covid bash