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Introduce segstats.py script for fast partial volume computation #239

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merged 4 commits into from
Jan 23, 2023
Merged

Introduce segstats.py script for fast partial volume computation #239

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4e42cbb
introduce segstats.py script for fast partial volume computation.
dkuegler Jan 10, 2023
c950c2f
fix some errors due to torch optimizations
dkuegler Jan 13, 2023
bf7cb59
[segstats] remove torch and legacy code, add threads flag
dkuegler Jan 16, 2023
d74fb51
update crop_patch_to_mask docstring
dkuegler Jan 17, 2023
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2 changes: 1 addition & 1 deletion FastSurferCNN/data_loader/conform.py
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Expand Up @@ -23,7 +23,7 @@
import nibabel as nib

from FastSurferCNN.utils.arg_types import (vox_size as __vox_size, target_dtype as __target_dtype,
conform_to_one_mm as __conform_to_one_mm, VoxSizeOption)
float_gt_zero_and_le_one as __conform_to_one_mm, VoxSizeOption)

HELPTEXT = """
Script to conform an MRI brain image to UCHAR, RAS orientation, and 1mm or minimal isotropic voxels
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