Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix memory limitation and subject/case globbing on slurm script #407

Merged
merged 2 commits into from
Dec 14, 2023

Conversation

dkuegler
Copy link
Member

@dkuegler dkuegler commented Dec 1, 2023

Adjust memory limits to fail less often
fix globbing, so globbing does happen if subjects/cases are read

confirmation for known bad OASIS cases is running

This specifically is caused by very inconsistent memory usage of mris_sample_parc, which runs into memory limitations for 14GB of memory.

fix globbing, so globbing does happen if subjects/cases are read
fix number of cpus per surf task (--hint=nomultithread makes sure hyperthreads are automatically allocated)
@dkuegler dkuegler marked this pull request as ready for review December 14, 2023 14:56
@dkuegler dkuegler merged commit aa70983 into Deep-MI:dev Dec 14, 2023
@dkuegler dkuegler deleted the fix/slurm/memory-limits branch December 14, 2023 14:57
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant