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Update citations.yaml with new research papers
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# DO NOT EDIT, GENERATED AUTOMATICALLY

- id: doi:10.1093/nar/gkad1082
title: "The Monarch Initiative in 2024: an analytic platform integrating phenotypes,\
\ genes\_and diseases across species"
authors:
- Tim E Putman
- Kevin Schaper
- Nicolas Matentzoglu
- "Vincent\_P Rubinetti"
- "Faisal\_S Alquaddoomi"
- Corey Cox
- J Harry Caufield
- Glass Elsarboukh
- Sarah Gehrke
- Harshad Hegde
- "Justin\_T Reese"
- Ian Braun
- "Richard\_M Bruskiewich"
- Luca Cappelletti
- Seth Carbon
- "Anita\_R Caron"
- "Lauren\_E Chan"
- "Christopher\_G Chute"
- "Katherina\_G Cortes"
- "Vin\xEDcius De\_Souza"
- Tommaso Fontana
- "Nomi\_L Harris"
- "Emily\_L Hartley"
- Eric Hurwitz
- "Julius\_O B Jacobsen"
- Madan Krishnamurthy
- "Bryan\_J Laraway"
- "James\_A McLaughlin"
- "Julie\_A McMurry"
- "Sierra\_A T Moxon"
- "Kathleen\_R Mullen"
- "Shawn\_T O\u2019Neil"
- "Kent\_A Shefchek"
- Ray Stefancsik
- Sabrina Toro
- "Nicole\_A Vasilevsky"
- "Ramona\_L Walls"
- "Patricia\_L Whetzel"
- David Osumi-Sutherland
- Damian Smedley
- "Peter\_N Robinson"
- "Christopher\_J Mungall"
- "Melissa\_A Haendel"
- "Monica\_C Munoz-Torres"
publisher: Nucleic Acids Research
date: '2023-11-24'
link: https://doi.org/gs6kmr
orcid: 0000-0002-4655-3773
plugin: orcid.py
file: orcid.yaml
- id: doi:10.1101/2023.10.11.560955
title: Integration of 168,000 samples reveals global patterns of the human gut microbiome
authors:
- Richard J. Abdill
- Samantha P. Graham
- Vincent Rubinetti
- Frank W. Albert
- Casey S. Greene
- Sean Davis
- Ran Blekhman
publisher: Cold Spring Harbor Laboratory
date: '2023-10-11'
link: https://doi.org/gsvf5z
orcid: 0000-0002-4655-3773
plugin: orcid.py
file: orcid.yaml
- id: doi:10.1093/nar/gkad289
title: 'MyGeneset.info: an interactive and programmatic platform for community-curated
and user-created collections of genes'
authors:
- Ricardo Avila
- Vincent Rubinetti
- Xinghua Zhou
- Dongbo Hu
- Zhongchao Qian
- Marco Alvarado Cano
- Everaldo Rodolpho
- Ginger Tsueng
- Casey Greene
- Chunlei Wu
publisher: Nucleic Acids Research
date: '2023-04-18'
link: https://doi.org/gr5hb5
orcid: 0000-0002-4655-3773
plugin: orcid.py
file: orcid.yaml
- id: doi:10.1101/2023.01.05.522941
title: Hetnet connectivity search provides rapid insights into how two biomedical
entities are related
authors:
- Daniel S. Himmelstein
- Michael Zietz
- Vincent Rubinetti
- Kyle Kloster
- Benjamin J. Heil
- Faisal Alquaddoomi
- Dongbo Hu
- David N. Nicholson
- Yun Hao
- Blair D. Sullivan
- Michael W. Nagle
- Casey S. Greene
publisher: Cold Spring Harbor Laboratory
date: '2023-01-07'
link: https://doi.org/grmcb9
orcid: 0000-0002-4655-3773
plugin: orcid.py
file: orcid.yaml
- id: doi:10.1093/gigascience/giad047
title: Hetnet connectivity search provides rapid insights into how biomedical entities
are related
authors:
- Daniel S Himmelstein
- Michael Zietz
- Vincent Rubinetti
- Kyle Kloster
- Benjamin J Heil
- Faisal Alquaddoomi
- Dongbo Hu
- David N Nicholson
- Yun Hao
- Blair D Sullivan
- Michael W Nagle
- Casey S Greene
publisher: GigaScience
date: '2022-12-28'
link: https://doi.org/gsd85n
orcid: 0000-0002-4655-3773
plugin: orcid.py
file: orcid.yaml
- id: doi:10.1101/2022.02.18.461833
title: 'MolEvolvR: A web-app for characterizing proteins using molecular evolution
and phylogeny'
authors:
- Jacob D Krol
- Joseph T Burke
- Samuel Z Chen
- Lo M Sosinski
- Faisal S Alquaddoomi
- Evan P Brenner
- Ethan P Wolfe
- Vincent P Rubinetti
- Shaddai Amolitos
- Kellen M Reason
- John B Johnston
- Janani Ravi
publisher: Cold Spring Harbor Laboratory
date: '2022-02-22'
link: https://doi.org/gstx7j
orcid: 0000-0002-4655-3773
plugin: orcid.py
file: orcid.yaml
- id: doi:10.1186/s13059-020-02021-3
title: Compressing gene expression data using multiple latent space dimensionalities
learns complementary biological representations
authors:
- Gregory P. Way
- Michael Zietz
- Vincent Rubinetti
- Daniel S. Himmelstein
- Casey S. Greene
publisher: Genome Biology
date: '2020-05-11'
link: https://doi.org/gg2mjh
orcid: 0000-0002-4655-3773
plugin: orcid.py
file: orcid.yaml
- id: doi:10.1371/journal.pcbi.1007128
title: Open collaborative writing with Manubot
authors:
- Daniel S. Himmelstein
- Vincent Rubinetti
- David R. Slochower
- Dongbo Hu
- Venkat S. Malladi
- Casey S. Greene
- Anthony Gitter
publisher: PLOS Computational Biology
date: '2019-06-24'
link: https://doi.org/c7np
orcid: 0000-0002-4655-3773
plugin: orcid.py
file: orcid.yaml
- id: doi:10.1101/573782
title: Sequential compression of gene expression across dimensionalities and methods
reveals no single best method or dimensionality
authors:
- Gregory P. Way
- Michael Zietz
- Vincent Rubinetti
- Daniel S. Himmelstein
- Casey S. Greene
publisher: Cold Spring Harbor Laboratory
date: '2019-03-11'
link: https://doi.org/gfxjxf
orcid: 0000-0002-4655-3773
plugin: sources.py
file: sources.yaml
- id: doi:10.1109/ICDCSW63686.2024.00023
title: 'Saila: Human Interface Device (HID) Injection Protection with Smart Phone
based Passwordless Security'
authors:
- Anisha Ghosh
- Aditya Mitra
- S Sibi Chakkaravarathy
- V S Devi Priya
- S Anitha
- Rakesh Thoppaen Suresh Babu
publisher: 2024 IEEE 44th International Conference on Distributed Computing Systems
Workshops (ICDCSW)
date: '2024-07-23'
link: https://doi.org/g64sf5
plugin: sources.py
file: sources.yaml
- id: doi:10.1145/3660628
title: 'mCaptcha: Replacing Captchas with Rate limiters to Improve Security and
Accessibility'
authors:
- Aravinth Manivannan
- Sibi Chakkaravarthy Sethuraman
- Devi Priya Vimala Sudhakaran
publisher: Communications of the ACM
date: '2024-09-26'
link: https://doi.org/g64sf9
plugin: sources.py
file: sources.yaml
- id: doi:10.1016/j.cose.2023.103600
title: 'A comprehensive examination of email spoofing: Issues and prospects for
email security'
authors:
- Sibi Chakkaravarthy Sethuraman
- Devi Priya V S
- Tarun Reddi
- Mulka Sai Tharun Reddy
- Muhammad Khurram Khan
publisher: Computers & Security
date: '2024-02-01'
link: https://doi.org/g64rnb
plugin: sources.py
file: sources.yaml
- id: doi:10.1016/j.cosrev.2023.100600
title: 'Flow based containerized honeypot approach for network traffic analysis:
An empirical study'
authors:
- Sibi Chakkaravarthy Sethuraman
- Tharshith Goud Jadapalli
- Devi Priya Vimala Sudhakaran
- Saraju P. Mohanty
publisher: Computer Science Review
date: '2023-11-01'
link: https://doi.org/g64rnf
plugin: sources.py
file: sources.yaml
- id: doi:10.1109/ACCESS.2022.3216665
title: 'Loki: A Physical Security Key Compatible IoT Based Lock for Protecting Physical
Assets'
authors:
- Sibi Chakkaravarthy Sethuraman
- Aditya Mitra
- Kuan-Ching Li
- Anisha Ghosh
- M. Gopinath
- Nitin Sukhija
publisher: IEEE Access
date: '2022-01-01'
link: https://doi.org/g64sgd
plugin: sources.py
file: sources.yaml
- id: doi:10.1109/TCE.2021.3085888
title: 'MyWear: A Novel Smart Garment for Automatic Continuous Vital Monitoring'
authors:
- Sibi C. Sethuraman
- Pranav Kompally
- Saraju P. Mohanty
- Uma Choppali
publisher: IEEE Transactions on Consumer Electronics
date: '2021-08-01'
link: https://doi.org/g6jbvh
plugin: sources.py
file: sources.yaml
- id: doi:10.56042/jsir.v80i7.37714
title: 'VISU: A 3D Printed Functional Robot for Human Pose Replication'
authors: []
publisher: Journal of Scientific & Industrial Research
date: '2021-07-01'
link: https://doi.org/g64sgg
plugin: sources.py
file: sources.yaml
- id: doi:10.1109/MCE.2020.3029769
title: 'VISU: A 3D Printed Functional Robot for Crowd Surveillance'
authors:
- Sibi Chakkaravarthy Sethuraman
- Pranav Kompally
- Srikar Reddy
publisher: IEEE Consumer Electronics Magazine
date: '2020-01-01'
link: https://doi.org/g64sgj
plugin: sources.py
file: sources.yaml
- id: doi:10.1016/j.cosrev.2021.100433
title: Comprehensive analysis of embeddings and pre-training in NLP
authors:
- Jatin Karthik Tripathy
- Sibi Chakkaravarthy Sethuraman
- Meenalosini Vimal Cruz
- Anupama Namburu
- Mangalraj P.
- Nandha Kumar R.
- Sudhakar Ilango S
- Vaidehi Vijayakumar
publisher: Computer Science Review
date: '2021-11-01'
link: https://doi.org/g64rnp
plugin: sources.py
file: sources.yaml

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