generated from greenelab/lab-website-template
-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
947ba13
commit b74b169
Showing
2 changed files
with
238 additions
and
106 deletions.
There are no files selected for viewing
Binary file not shown.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,115 +1,247 @@ | ||
| - id: doi:10.1145/3629260 | ||
| title: "mCaptcha: Replacing CAPTCHAs with Ratelimiters to Improve Security and Accessibility" | ||
| authors: | ||
| - Sibi Chakkaravarthy Sethuraman | ||
| - Aravinth TM | ||
| - Devi Priya VS | ||
| publisher: Communications of the ACM | ||
| date: '2024' | ||
| link: https://doi.org/10.1145/3629260 | ||
| plugin: manual | ||
| # DO NOT EDIT, GENERATED AUTOMATICALLY | ||
|
|
||
| - id: doi:10.1016/j.cose.2023.103600 | ||
| title: "A Comprehensive Examination of Email Spoofing: Issues and Prospects for Email Security" | ||
| - id: doi:10.1093/nar/gkad1082 | ||
| title: "The Monarch Initiative in 2024: an analytic platform integrating phenotypes,\ | ||
| \ genes\_and diseases across species" | ||
| authors: | ||
| - Sibi Chakkaravarthy Sethuraman | ||
| - Devi Priya VS | ||
| - Tarun Reddi | ||
| - Mulka Sai Tharun Reddy | ||
| - Muhammad Khurram Khan | ||
| publisher: Computers & Security, Elsevier | ||
| date: '2023' | ||
| link: https://doi.org/10.1016/j.cose.2023.103600 | ||
| plugin: manual | ||
|
|
||
| - id: doi:10.1016/j.cosrev.2023.100600 | ||
| title: "Flow based containerized honeypot approach for network traffic analysis: An empirical study" | ||
| - Tim E Putman | ||
| - Kevin Schaper | ||
| - Nicolas Matentzoglu | ||
| - "Vincent\_P Rubinetti" | ||
| - "Faisal\_S Alquaddoomi" | ||
| - Corey Cox | ||
| - J Harry Caufield | ||
| - Glass Elsarboukh | ||
| - Sarah Gehrke | ||
| - Harshad Hegde | ||
| - "Justin\_T Reese" | ||
| - Ian Braun | ||
| - "Richard\_M Bruskiewich" | ||
| - Luca Cappelletti | ||
| - Seth Carbon | ||
| - "Anita\_R Caron" | ||
| - "Lauren\_E Chan" | ||
| - "Christopher\_G Chute" | ||
| - "Katherina\_G Cortes" | ||
| - "Vin\xEDcius De\_Souza" | ||
| - Tommaso Fontana | ||
| - "Nomi\_L Harris" | ||
| - "Emily\_L Hartley" | ||
| - Eric Hurwitz | ||
| - "Julius\_O B Jacobsen" | ||
| - Madan Krishnamurthy | ||
| - "Bryan\_J Laraway" | ||
| - "James\_A McLaughlin" | ||
| - "Julie\_A McMurry" | ||
| - "Sierra\_A T Moxon" | ||
| - "Kathleen\_R Mullen" | ||
| - "Shawn\_T O\u2019Neil" | ||
| - "Kent\_A Shefchek" | ||
| - Ray Stefancsik | ||
| - Sabrina Toro | ||
| - "Nicole\_A Vasilevsky" | ||
| - "Ramona\_L Walls" | ||
| - "Patricia\_L Whetzel" | ||
| - David Osumi-Sutherland | ||
| - Damian Smedley | ||
| - "Peter\_N Robinson" | ||
| - "Christopher\_J Mungall" | ||
| - "Melissa\_A Haendel" | ||
| - "Monica\_C Munoz-Torres" | ||
| publisher: Nucleic Acids Research | ||
| date: '2023-11-24' | ||
| link: https://doi.org/gs6kmr | ||
| orcid: 0000-0002-4655-3773 | ||
| plugin: orcid.py | ||
| file: orcid.yaml | ||
| - id: doi:10.1101/2023.10.11.560955 | ||
| title: Integration of 168,000 samples reveals global patterns of the human gut microbiome | ||
| authors: | ||
| - Sibi Chakkaravarthy Sethuraman | ||
| - Tharshith Goud Jadapalli | ||
| - Devi Priya | ||
| - Saraju P Mohanty | ||
| publisher: Computer Science Review, Elsevier | ||
| date: '2023' | ||
| link: https://doi.org/10.1016/j.cosrev.2023.100600 | ||
| plugin: manual | ||
|
|
||
| - id: doi:10.1109/ACCESS.2022.3212484 | ||
| title: "Loki: A Physical Security Key Compatible IoT Based Lock for Protecting Physical Assets" | ||
| - Richard J. Abdill | ||
| - Samantha P. Graham | ||
| - Vincent Rubinetti | ||
| - Frank W. Albert | ||
| - Casey S. Greene | ||
| - Sean Davis | ||
| - Ran Blekhman | ||
| publisher: Cold Spring Harbor Laboratory | ||
| date: '2023-10-11' | ||
| link: https://doi.org/gsvf5z | ||
| orcid: 0000-0002-4655-3773 | ||
| plugin: orcid.py | ||
| file: orcid.yaml | ||
| - id: doi:10.1093/nar/gkad289 | ||
| title: 'MyGeneset.info: an interactive and programmatic platform for community-curated | ||
| and user-created collections of genes' | ||
| authors: | ||
| - Sibi Chakkaravarthy Sethuraman | ||
| - Aditya Mitra | ||
| - Kuan-Ching Li | ||
| - Anisha Ghosh | ||
| - M Gopinath | ||
| - Nitin Sukhija | ||
| publisher: IEEE Access | ||
| date: '2022' | ||
| link: https://doi.org/10.1109/ACCESS.2022.3212484 | ||
| plugin: manual | ||
|
|
||
| - id: doi:10.1109/TCE.2021.3086445 | ||
| title: "MyWear: A Novel Smart Garment for Automatic Continuous Vital Monitoring" | ||
| - Ricardo Avila | ||
| - Vincent Rubinetti | ||
| - Xinghua Zhou | ||
| - Dongbo Hu | ||
| - Zhongchao Qian | ||
| - Marco Alvarado Cano | ||
| - Everaldo Rodolpho | ||
| - Ginger Tsueng | ||
| - Casey Greene | ||
| - Chunlei Wu | ||
| publisher: Nucleic Acids Research | ||
| date: '2023-04-18' | ||
| link: https://doi.org/gr5hb5 | ||
| orcid: 0000-0002-4655-3773 | ||
| plugin: orcid.py | ||
| file: orcid.yaml | ||
| - id: doi:10.1101/2023.01.05.522941 | ||
| title: Hetnet connectivity search provides rapid insights into how two biomedical | ||
| entities are related | ||
| authors: | ||
| - S. Sibi Chakkaravarthy | ||
| - Pranav Kompally | ||
| - Saraju P Mohanty | ||
| - Uma Chopalli | ||
| publisher: IEEE Transactions on Consumer Electronics | ||
| date: '2021' | ||
| link: https://doi.org/10.1109/TCE.2021.3086445 | ||
| plugin: manual | ||
|
|
||
| - id: doi:10.56042/jsir.v80i07.3744 | ||
| title: "VISU: A 3D Printed Functional Robot for Human Pose Replication" | ||
| - Daniel S. Himmelstein | ||
| - Michael Zietz | ||
| - Vincent Rubinetti | ||
| - Kyle Kloster | ||
| - Benjamin J. Heil | ||
| - Faisal Alquaddoomi | ||
| - Dongbo Hu | ||
| - David N. Nicholson | ||
| - Yun Hao | ||
| - Blair D. Sullivan | ||
| - Michael W. Nagle | ||
| - Casey S. Greene | ||
| publisher: Cold Spring Harbor Laboratory | ||
| date: '2023-01-07' | ||
| link: https://doi.org/grmcb9 | ||
| orcid: 0000-0002-4655-3773 | ||
| plugin: orcid.py | ||
| file: orcid.yaml | ||
| - id: doi:10.1093/gigascience/giad047 | ||
| title: Hetnet connectivity search provides rapid insights into how biomedical entities | ||
| are related | ||
| authors: | ||
| - Pranav Kompally | ||
| - S. Sibi Chakkaravarthy | ||
| - Srikar Reddy | ||
| - Charan Koduri | ||
| - Yaswanth Naidu | ||
| - M.Raghavaiah | ||
| - Sashidhar Reddy | ||
| - Namburi Nikhil | ||
| publisher: Journal of Scientific and Industrial Research (JSIR) | ||
| date: '2021' | ||
| link: https://doi.org/10.56042/jsir.v80i07.3744 | ||
| plugin: manual | ||
|
|
||
| - id: doi:10.1109/MCE.2020.3033269 | ||
| title: "VISU: A 3D Printed Functional Robot for Crowd Surveillance" | ||
| - Daniel S Himmelstein | ||
| - Michael Zietz | ||
| - Vincent Rubinetti | ||
| - Kyle Kloster | ||
| - Benjamin J Heil | ||
| - Faisal Alquaddoomi | ||
| - Dongbo Hu | ||
| - David N Nicholson | ||
| - Yun Hao | ||
| - Blair D Sullivan | ||
| - Michael W Nagle | ||
| - Casey S Greene | ||
| publisher: GigaScience | ||
| date: '2022-12-28' | ||
| link: https://doi.org/gsd85n | ||
| orcid: 0000-0002-4655-3773 | ||
| plugin: orcid.py | ||
| file: orcid.yaml | ||
| - id: doi:10.1101/2022.02.18.461833 | ||
| title: 'MolEvolvR: A web-app for characterizing proteins using molecular evolution | ||
| and phylogeny' | ||
| authors: | ||
| - S. Sibi Chakkaravarthy | ||
| - Pranav Kompally | ||
| - Srikar Reddy | ||
| publisher: IEEE Consumer Electronics | ||
| date: '2021' | ||
| link: https://doi.org/10.1109/MCE.2020.3033269 | ||
| plugin: manual | ||
|
|
||
| - id: doi:10.1016/j.compeleceng.2022.107751 | ||
| title: "A Decentralized Open Web Cryptographic Standard" | ||
| - Jacob D Krol | ||
| - Joseph T Burke | ||
| - Samuel Z Chen | ||
| - Lo M Sosinski | ||
| - Faisal S Alquaddoomi | ||
| - Evan P Brenner | ||
| - Ethan P Wolfe | ||
| - Vincent P Rubinetti | ||
| - Shaddai Amolitos | ||
| - Kellen M Reason | ||
| - John B Johnston | ||
| - Janani Ravi | ||
| publisher: Cold Spring Harbor Laboratory | ||
| date: '2022-02-22' | ||
| link: https://doi.org/gstx7j | ||
| orcid: 0000-0002-4655-3773 | ||
| plugin: orcid.py | ||
| file: orcid.yaml | ||
| - id: doi:10.1186/s13059-020-02021-3 | ||
| title: Compressing gene expression data using multiple latent space dimensionalities | ||
| learns complementary biological representations | ||
| authors: | ||
| - Dedipyaman Das | ||
| - S.Sibi Chakkaravarthy | ||
| - Suresh Chandra Satapathy | ||
| publisher: Computers and Electrical Engineering, Elsevier | ||
| date: '2022' | ||
| link: https://doi.org/10.1016/j.compeleceng.2022.107751 | ||
| plugin: manual | ||
|
|
||
| - id: doi:10.1016/j.cosrev.2021.100433 | ||
| title: "Comprehensive Analysis of Embeddings and Pre-Training in NLP" | ||
| - Gregory P. Way | ||
| - Michael Zietz | ||
| - Vincent Rubinetti | ||
| - Daniel S. Himmelstein | ||
| - Casey S. Greene | ||
| publisher: Genome Biology | ||
| date: '2020-05-11' | ||
| link: https://doi.org/gg2mjh | ||
| orcid: 0000-0002-4655-3773 | ||
| plugin: orcid.py | ||
| file: orcid.yaml | ||
| - id: doi:10.1371/journal.pcbi.1007128 | ||
| title: Open collaborative writing with Manubot | ||
| authors: | ||
| - Daniel S. Himmelstein | ||
| - Vincent Rubinetti | ||
| - David R. Slochower | ||
| - Dongbo Hu | ||
| - Venkat S. Malladi | ||
| - Casey S. Greene | ||
| - Anthony Gitter | ||
| publisher: PLOS Computational Biology | ||
| date: '2020-12-04' | ||
| link: https://doi.org/c7np | ||
| orcid: 0000-0002-4655-3773 | ||
| plugin: sources.py | ||
| file: sources.yaml | ||
| type: paper | ||
| description: Lorem ipsum _dolor_ **sit amet**, consectetur adipiscing elit, sed | ||
| do eiusmod tempor incididunt ut labore et dolore magna aliqua. | ||
| image: https://journals.plos.org/ploscompbiol/article/figure/image?size=inline&id=info:doi/10.1371/journal.pcbi.1007128.g001&rev=2 | ||
| buttons: | ||
| - type: manubot | ||
| link: https://greenelab.github.io/meta-review/ | ||
| - type: source | ||
| text: Manuscript Source | ||
| link: https://github.com/greenelab/meta-review | ||
| - type: website | ||
| link: http://manubot.org/ | ||
| tags: | ||
| - open science | ||
| - collaboration | ||
| repo: greenelab/meta-review | ||
| - id: doi:10.1101/573782 | ||
| title: Sequential compression of gene expression across dimensionalities and methods | ||
| reveals no single best method or dimensionality | ||
| authors: | ||
| - Gregory P. Way | ||
| - Michael Zietz | ||
| - Vincent Rubinetti | ||
| - Daniel S. Himmelstein | ||
| - Casey S. Greene | ||
| publisher: Cold Spring Harbor Laboratory | ||
| date: '2019-03-11' | ||
| link: https://doi.org/gfxjxf | ||
| orcid: 0000-0002-4655-3773 | ||
| plugin: orcid.py | ||
| file: orcid.yaml | ||
| - id: doi:10.1016/j.csbj.2020.05.017 | ||
| title: Constructing knowledge graphs and their biomedical applications | ||
| authors: | ||
| - David N. Nicholson | ||
| - Casey S. Greene | ||
| publisher: Computational and Structural Biotechnology Journal | ||
| date: '2020-01-01' | ||
| link: https://doi.org/gg7m48 | ||
| image: https://ars.els-cdn.com/content/image/1-s2.0-S2001037020302804-gr1.jpg | ||
| plugin: sources.py | ||
| file: sources.yaml | ||
| - id: doi:10.7554/eLife.32822 | ||
| title: Sci-Hub provides access to nearly all scholarly literature | ||
| authors: | ||
| - Jatin Karthik Tripathy | ||
| - S.Sibi Chakkaravarthy | ||
| - Meenalosini Vimal Cruz | ||
| - Anupama Namburu | ||
| - Mangalraj P | ||
| - Nandha Kumar R | ||
| - Sudhakar Ilango | ||
| - Vaidehi Vijayakumar | ||
| publisher: Computer Science Review, Elsevier | ||
| date: '2021' | ||
| link: https://doi.org/10.1016/j.cosrev.2021.100433 | ||
| plugin: manual | ||
| - Daniel S Himmelstein | ||
| - Ariel Rodriguez Romero | ||
| - Jacob G Levernier | ||
| - Thomas Anthony Munro | ||
| - Stephen Reid McLaughlin | ||
| - Bastian Greshake Tzovaras | ||
| - Casey S Greene | ||
| publisher: eLife | ||
| date: '2018-03-01' | ||
| link: https://doi.org/ckcj | ||
| image: https://iiif.elifesciences.org/lax:32822%2Felife-32822-fig8-v3.tif/full/863,/0/default.webp | ||
| plugin: sources.py | ||
| file: sources.yaml |