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update AlphaFold links #137

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Sep 30, 2022
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update AlphaFold links #137

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110 changes: 55 additions & 55 deletions torchdrug/datasets/alphafolddb.py
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Original file line number Diff line number Diff line change
Expand Up @@ -28,63 +28,63 @@ class AlphaFoldDB(data.ProteinDataset):
"""

urls = [
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000006548_3702_ARATH_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000001940_6239_CAEEL_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000000559_237561_CANAL_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000000437_7955_DANRE_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000002195_44689_DICDI_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000000803_7227_DROME_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000000625_83333_ECOLI_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000008827_3847_SOYBN_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000005640_9606_HUMAN_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000008153_5671_LEIIN_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000000805_243232_METJA_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000000589_10090_MOUSE_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000001584_83332_MYCTU_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000059680_39947_ORYSJ_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000001450_36329_PLAF7_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000002494_10116_RAT_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000002311_559292_YEAST_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000002485_284812_SCHPO_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000008816_93061_STAA8_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000002296_353153_TRYCC_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000007305_4577_MAIZE_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/swissprot_pdb_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000001631_447093_AJECG_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000006672_6279_BRUMA_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000000799_192222_CAMJE_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000094526_86049_9EURO1_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000274756_318479_DRAME_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000325664_1352_ENTFC_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000053029_1442368_9EURO2_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000000579_71421_HAEIN_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000000429_85962_HELPY_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000007841_1125630_KLEPH_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000008153_5671_LEIIN_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000078237_100816_9PEZI1_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000000806_272631_MYCLE_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000001584_83332_MYCTU_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000020681_1299332_MYCUL_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000000535_242231_NEIG1_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000006304_1133849_9NOCA1_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000024404_6282_ONCVO_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000002059_502779_PARBA_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000001450_36329_PLAF7_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000002438_208964_PSEAE_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000001014_99287_SALTY_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000008854_6183_SCHMA_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000002716_300267_SHIDS_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000018087_1391915_SPOS1_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000008816_93061_STAA8_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000000586_171101_STRR6_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000035681_6248_STRER_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000030665_36087_TRITR_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000008524_185431_TRYB2_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000002296_353153_TRYCC_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000270924_6293_WUCBA_v2.tar"
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000006548_3702_ARATH_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000001940_6239_CAEEL_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000000559_237561_CANAL_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000000437_7955_DANRE_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000002195_44689_DICDI_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000000803_7227_DROME_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000000625_83333_ECOLI_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000008827_3847_SOYBN_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000005640_9606_HUMAN_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000008153_5671_LEIIN_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000000805_243232_METJA_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000000589_10090_MOUSE_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000001584_83332_MYCTU_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000059680_39947_ORYSJ_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000001450_36329_PLAF7_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000002494_10116_RAT_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000002311_559292_YEAST_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000002485_284812_SCHPO_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000008816_93061_STAA8_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000002296_353153_TRYCC_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000007305_4577_MAIZE_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/swissprot_pdb_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000001631_447093_AJECG_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000006672_6279_BRUMA_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000000799_192222_CAMJE_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000094526_86049_9EURO1_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000274756_318479_DRAME_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000325664_1352_ENTFC_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000053029_1442368_9EURO2_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000000579_71421_HAEIN_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000000429_85962_HELPY_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000007841_1125630_KLEPH_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000008153_5671_LEIIN_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000078237_100816_9PEZI1_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000000806_272631_MYCLE_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000001584_83332_MYCTU_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000020681_1299332_MYCUL_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000000535_242231_NEIG1_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000006304_1133849_9NOCA1_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000024404_6282_ONCVO_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000002059_502779_PARBA_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000001450_36329_PLAF7_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000002438_208964_PSEAE_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000001014_99287_SALTY_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000008854_6183_SCHMA_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000002716_300267_SHIDS_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000018087_1391915_SPOS1_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000008816_93061_STAA8_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000000586_171101_STRR6_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000035681_6248_STRER_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000030665_36087_TRITR_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000008524_185431_TRYB2_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000002296_353153_TRYCC_v2.tar",
"https://ftp.ebi.ac.uk/pub/databases/alphafold/v2/UP000270924_6293_WUCBA_v2.tar"
]
md5s = [
"82b14d14404e39793cf73c1e0f083865", "9e26602ba2d9f233ef4fcf82703ddb59",
"4cd5f596ebfc3d45d9f6b647dc5684af", "9e26602ba2d9f233ef4fcf82703ddb59",
"60a09db1e1c47a98763d09879784f536", "a0ab562b7372f149673c4518f949501f",
"6205138b14fb7e7ec09b366e3e4f294b", "31f31359cd7254f82304e3886440bdd3",
"a590096e65461ed4eb092b2147b97f0b", "8f1e120f372995644a7101ad58e5b2ae",
Expand Down