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@Dfam-consortium

Dfam Consortium

Resources for the Study of Transposable Element Families

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  1. RepeatMasker RepeatMasker Public

    RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

    Perl 230 50

  2. RepeatModeler RepeatModeler Public

    De-Novo Repeat Discovery Tool

    Perl 194 22

  3. TETools TETools Public

    Dfam Transposable Element Tools Docker container.

    Perl 84 17

  4. FamDB FamDB Public

    FamDB file format library and utilities

    Python 16 1

  5. AlignmentSummaryViewer AlignmentSummaryViewer Public

    Multiple sequence alignment visualization component

    HTML 4

  6. RepeatMasker_Nextflow RepeatMasker_Nextflow Public

    Nextflow script for running RepeatMasker on a cluster

    Perl 4

Repositories

Showing 10 of 17 repositories
  • FamDB Public

    FamDB file format library and utilities

    Dfam-consortium/FamDB’s past year of commit activity
    Python 16 1 0 0 Updated Nov 7, 2024
  • Smitten Public

    A format for sequence identifiers and reference parsing implementations

    Dfam-consortium/Smitten’s past year of commit activity
    Perl 0 CC0-1.0 0 0 0 Updated Nov 6, 2024
  • RepeatMasker Public

    RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

    Dfam-consortium/RepeatMasker’s past year of commit activity
    Perl 230 50 14 3 Updated Nov 6, 2024
  • DisCoord Public

    A tool for validating and fixing sequence coordinates in FASTA or Stockholm files

    Dfam-consortium/DisCoord’s past year of commit activity
    Rust 0 0 0 0 Updated Nov 6, 2024
  • RepeatAfterMe Public

    A package for the extension of repetitive DNA sequences

    Dfam-consortium/RepeatAfterMe’s past year of commit activity
    C 0 CC0-1.0 0 1 0 Updated Oct 17, 2024
  • Dfam-API Public

    Dfam API server

    Dfam-consortium/Dfam-API’s past year of commit activity
    JavaScript 1 CC0-1.0 0 1 0 Updated Oct 4, 2024
  • TETools Public

    Dfam Transposable Element Tools Docker container.

    Dfam-consortium/TETools’s past year of commit activity
    Perl 84 CC0-1.0 17 1 0 Updated Oct 1, 2024
  • RepeatModeler Public

    De-Novo Repeat Discovery Tool

    Dfam-consortium/RepeatModeler’s past year of commit activity
    Perl 194 22 107 1 Updated Sep 23, 2024
  • tss_prefilter Public

    Tensor Slide Sketch Alignment Prefilter

    Dfam-consortium/tss_prefilter’s past year of commit activity
    Rust 1 0 0 0 Updated Sep 16, 2024
  • Dfam-Portal Public

    Angular website for Dfam resource

    Dfam-consortium/Dfam-Portal’s past year of commit activity
    TypeScript 1 CC0-1.0 1 0 0 Updated Mar 13, 2024
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