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1. Know2BIO Know2BIO Public

   Forked from Yijia-Xiao/Know2BIO

   Know2BIO: A Comprehensive Dual-View Benchmark for Evolving Biomedical Knowledge Graphs

   Python

2. BE298FinalProject BE298FinalProject Public

   Fall 2022 Bioengineering 298 Final Project: using protein networks to understand drug and disease mechanisms

   Jupyter Notebook

3. caseolap_lift caseolap_lift Public

   Forked from CaseOLAP/caseolap_lift

   Fall 2022 Project collaborating with Alexander Pelletier et al. to improve CaseOLAP's input data quantity, result quality, and usability.

   Python

4. gene_to_anatomy_text_mining gene_to_anatomy_text_mining Public

   Uses PubTator3 to identify genes in PubMed articles. Uses PubMed API and MeSH annotations to identify articles studying anatomies. Uses co-occurrence of gene mentions and anatomy topics to calculat…

   Python

5. knowledge_graph_of_text_mined_pubmed knowledge_graph_of_text_mined_pubmed Public

   knowledge_graph_of_text_mined_pubmed

   Python 1

6. classifying_pubmed_documents classifying_pubmed_documents Public

   Python