GOLD biome predictor

This project contains a library and command line tool to predict a GOLD biome for a given set of text.

Installation

git clone git@github.com:EBI-Metagenomics/biome_prediction.git
pip install .

Usage (i.e: command)

predict-biome

This will open a prompt into which text can be typed/pasted for prediction.

Updating training data:

bash fetch_data/update_data.sh

This will create a new set of training data; move it replace raw_data.tsv in the data/ folder, and re-run classify.py to retrain the model. Remember to commit the updated model to GitHub!