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Fix/virsorter2

Fix/virsorter2 #83

Workflow file for this run

name: Python unit tests
on:
push:
branches: [ "master" ]
pull_request:
branches: [ "master", "dev" ]
permissions:
contents: read
jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: Set up Python 3.10
uses: actions/setup-python@v3
with:
python-version: "3.10"
- name: update pip
run: |
python -m pip install --upgrade pip
- name: Install dependencies
run: |
pip install -r requirements-test.txt
pip install --upgrade numpy pandas
- name: Unit tests
run: |
# TODO, improve the pythonpath handling
PYTHONPATH="$PYTHONPATH:bin"
python -m unittest discover tests