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@EBIvariation

EBI Variation

The Variation team from EMBL-EBI develops several bioinformatics projects such as EVA, DGVa and EGA

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  1. vcf-validator vcf-validator Public

    Validation suite for Variant Call Format (VCF) files, implemented using C++11

    C++ 133 41

  2. eva-pipeline eva-pipeline Public

    Genomic variation pipeline for the European Variation Archive, implemented using Spring Batch

    Java 6 24

  3. eva-ws eva-ws Public

    European Variation Archive REST web services API

    Java 6 21

  4. eva-web eva-web Public

    Web front-end for the European Variation Archive

    JavaScript 5 10

  5. eva-tools eva-tools Public

    Tools compatible with the infrastructure of the European Variation Archive pipeline

    Java 1 13

  6. variation-commons variation-commons Public

    Library of core components used by multiple EBI Variation projects

    Java 2 16

Repositories

Showing 10 of 48 repositories
  • eva-submission Public

    Components that connect and automate main tasks in the EVA submission workflow

    EBIvariation/eva-submission’s past year of commit activity
    Python 1 Apache-2.0 7 0 4 Updated Jan 24, 2025
  • variant-remapping Public

    The pipeline for remapping VCF variants between two arbitrary FASTA assemblies.

    EBIvariation/variant-remapping’s past year of commit activity
    Python 5 Apache-2.0 7 6 2 Updated Jan 23, 2025
  • opentargets-pharmgkb Public

    Pipeline to provide evidence strings for Open Targets from PharmGKB

    EBIvariation/opentargets-pharmgkb’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 1 11 1 Updated Jan 22, 2025
  • CMAT Public

    ClinVar Mapping and Annotation Toolkit

    EBIvariation/CMAT’s past year of commit activity
    Jupyter Notebook 19 Apache-2.0 10 59 1 Updated Jan 22, 2025
  • eva-common-pyutils Public

    EBI EVA - Common Python Utilities

    EBIvariation/eva-common-pyutils’s past year of commit activity
    Python 0 Apache-2.0 6 0 0 Updated Jan 21, 2025
  • eva-accession Public

    EVA non-human variant accessioning service

    EBIvariation/eva-accession’s past year of commit activity
    Java 4 Apache-2.0 12 0 5 Updated Jan 21, 2025
  • eva-assembly-ingestion Public

    Automation for ingesting a new assembly for a species

    EBIvariation/eva-assembly-ingestion’s past year of commit activity
    Python 1 Apache-2.0 4 0 0 Updated Jan 20, 2025
  • eva-submission-ws Public

    Web services for EVA Submissions

    EBIvariation/eva-submission-ws’s past year of commit activity
    Java 0 Apache-2.0 4 0 0 Updated Jan 20, 2025
  • accession-commons Public

    Generic library for accessioning any type of object

    EBIvariation/accession-commons’s past year of commit activity
    Java 0 Apache-2.0 12 0 2 Updated Jan 15, 2025
  • eva-sub-cli Public

    EVA Submission Command Line Interface for Validation

    EBIvariation/eva-sub-cli’s past year of commit activity
    HTML 0 Apache-2.0 4 0 0 Updated Jan 14, 2025
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