Transport and Covariance Matrices #743

cemitch99 · 2024-10-15T18:06:04Z

This is a duplicate of the draft PR#714 owned by cemitch99.

general structure
- use amrex::SmallMatrix
distribution init of covariance matrix
return transport matrices in each element
user-defined, thin linear element (kick) User-Defined Linear Map #538 User-provided linear matrix element #703
push for user-defined linear element
push for covariance matrix
- ImpactX::evolve -> ImpactX::track_particles Introduce sim.track_particles() #741
- add: ImpactX::track_envelope

General structure. Co-authored-by: Chad Mitchell <chadmitchell@lbl.gov>

Update initialization of LinearMap element.

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Finish implementation of LinearMap element push.

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Initialize covariance matrix from distribution parameters.

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…ance-and-transport-maps

Remove unnecessary ,.

Correct naming in elements.cpp binding for LinearMap.

src/particles/elements/mixin/lineartransport.H

+        {
+        }
+
+        //LinearTransport () = default;


ax3l and others added 14 commits September 24, 2024 15:34

[Draft] Transport and Covariance Matrices

4e2a733

General structure. Co-authored-by: Chad Mitchell <chadmitchell@lbl.gov>

Update InitElement.cpp

5d09112

Update initialization of LinearMap element.

[pre-commit.ci] auto fixes from pre-commit.com hooks

7d95ca5

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Update LinearMap.H

65c9bd0

Finish implementation of LinearMap element push.

[pre-commit.ci] auto fixes from pre-commit.com hooks

2ad47d2

for more information, see https://pre-commit.ci

Update InitDistribution.cpp

c2fe2be

Initialize covariance matrix from distribution parameters.

Add Drift return linear map.

a5df0a3

Use LinearMap struct in Drift.H.

b2f158c

Merge branch 'development' into topic-covariance-and-transport-maps

0044f78

[pre-commit.ci] auto fixes from pre-commit.com hooks

cd4c989

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Merge remote-tracking branch 'mainline/development' into topic-covari…

a9888ce

…ance-and-transport-maps

Transport/Covariane: Use SmallMatrix

817cc51

Add Python bindings for LinearMap element.

1ef158e

Update elements.cpp

ccad983

Remove unnecessary ,.

cemitch99 changed the title ~~Topic covariance and transport maps~~ Transport and Covariance Matrices Oct 15, 2024

Update elements.cpp

2b288db

Correct naming in elements.cpp binding for LinearMap.

github-advanced-security bot found potential problems Oct 15, 2024

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src/particles/elements/mixin/lineartransport.H

{

}

//LinearTransport () = default;

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Transport and Covariance Matrices #743

Transport and Covariance Matrices #743

cemitch99 commented Oct 15, 2024 •

edited

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Transport and Covariance Matrices #743

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Transport and Covariance Matrices #743

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cemitch99 commented Oct 15, 2024 • edited Loading

cemitch99 commented Oct 15, 2024 •

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