Merge pull request #9 from streeve/ci_run

Install and run small example in CI

.github/workflows/CI.yml

@@ -53,5 +53,9 @@ jobs:
         uses: actions/checkout@v2.2.0
       - name: Build
         run: |
-          cmake -B build -DCMAKE_PREFIX_PATH="$HOME/Cabana"
+          cmake -B build -DCMAKE_INSTALL_PREFIX=$HOME/haccabana -DCMAKE_PREFIX_PATH="$HOME/Cabana"
           cmake --build build --parallel 2
+          cmake --install build
+      - name: Run
+        run: |
+          OMP_PROC_BIND=false $HOME/haccabana/bin/driver_short-range -s -t 0 -c 064.indat.params

064.indat.params

@@ -0,0 +1,146 @@
+################################################################################
+# Header version information
+################################################################################
+HACC_HEADER_VERSION 1.0.0
+
+################################################################################
+# Cosmological Parameters
+# Length scales are measured in Mpc/h
+# OMEGA_CDM and OMEGA_NU given for Omega_cdm and Omega_nu (no $h^2$)
+# DEUT=Omegab*h^2 
+# HUBBLE: Hubble constant/100 km/s/Mpc
+# SS8: target value for sigma_8
+# NS: index of the primordial power spectrum
+# W_DE: constant dark energy equation of state
+# Currently flat Universe only
+################################################################################
+OMEGA_CDM 0.26067
+DEUT 0.02242
+OMEGA_NU 0.0
+HUBBLE 0.6766
+SS8 0.8102
+NS 0.9665
+W_DE -1.0	
+WA_DE 0.0
+T_CMB 2.726
+N_EFF_MASSLESS 3.04 
+N_EFF_MASSIVE 0.0
+
+################################################################################
+# Initializer Set-up and read-ins
+# ZIN: Starting redshift
+# USE_WHITE_NOISE_INIT: YES: real space, NO: k space
+# input type: INIT|RECORD|BLOCK|COSMO|RESTART
+# INIT: generates internal initial conditions, rest if for read-ins
+# distrib. type: ROUND_ROBIN|ALL_TO_ALL|ONE_TO_ONE|restart_step
+#                (ignored if INPUT_TYPE is INIT)
+# ROUND_ROBIN indicates particles must be looked at by all processors
+# ONE_TO_ONE indicates that particles physically reside on matching processor
+# ALL_TO_ALL improved ROUND_ROBIN
+# For restart: specify time step and modify INPUT_BASE_NAME
+# TRANS: Transfer function: Read in CAMB file (specify name in INPUT_BASE_NAME) 
+#        or internal TF (KH, HS, PD, BBKS)
+################################################################################
+Z_IN 200.0
+USE_WHITE_NOISE_INIT YES
+TRANS CMB
+INPUT_BASE_NAME ./AMD/indat_params/cmbM000.tf
+INPUT_TYPE INIT
+DISTRIBUTE_TYPE LAST
+MAX_MINUTES 115
+
+# COMMENT_ER
+# set a really high redshift to turn off subcycle
+SKIP_HIGHZ_INTEGRATION_CHECK YES
+PM_SUBCYCLE_REDSHIFT 1000.0
+SKIP_SR_POTENTIAL YES
+SKIP_STREAM NO
+SKIP_SR_KICK NO
+
+################################################################################
+# Outputs for initial conditions, alive particles, some analysis and restarts, refreshes
+# WRITE_IC: write initial condition, format will be the same as for all outputs
+# USE_MPI_IO: YES=one large file, NO=one file per rank in cosmo format
+# REFRESH: takes either explicit time steps or file name with time steps specified,
+#          same is true for all other outputs besides FINAL_GRID and VIS_SLAB
+#          which only happen at the end if commented in
+# SMALL_DUMP: prints all particles from rank 0
+# OUTPUT_FRACTION: fraction of particles in alive dumps
+# VIS_STEP: prints uniform grid of full simulation in Insley format
+# FINAL_GRID_OUTPUT: ascii file! prints grid at last time step, only for small runs
+# VIZ_SLAB: prints slice of final grid in Insley format
+################################################################################
+WRITE_IC NO
+USE_MPI_IO YES
+OUTPUT_BASE_NAME ./output/m000
+REFRESH 10 11 12
+ALIVE_DUMP 
+OUTPUT_FRACTION 0.01
+FULL_ALIVE_DUMP 4
+SMALL_DUMP 0
+RESTART_DUMP 10
+PK_DUMP 10
+#VIZ_STEP 30
+FINAL_GRID_OUTPUT NO
+VIZ_SLAB 10
+COMPRESS_OUTPUT YES
+
+################################################################################
+# Code parameters I: essential parameters to specify the run/resolution
+# ISEED: random number for realizatio
+# NG: number of grid points (1d), NP: number of particles (1d)
+# RL: physical box size [h^(-1)Mpc]
+# Z_FIN: final redshift
+# Timestepper: N_STEPS: number of PM steps, N_SUB: number of sub-cycles (3-5)
+# OL: PM overload and refresh: 8 Mpc good choice, depends on overall volume
+# RSM: Tree smoothing scale, fraction of PM grid size
+# max RCB tree particles per leaf, ~100 optimal for BG/Q, ~24 for X86
+################################################################################
+I_SEED 5126873
+NG 64
+NP 64
+RL 64.0
+Z_FIN 50.0
+N_STEPS 10
+N_SUB 5
+OL 8.0
+ANALYSIS_OL 8.0
+RSM 0.01
+RCB_TREE_PPN 256
+
+################################################################################
+# Code parameters II: specifications for tree/memory etc., mostly unchanged
+# CM_SIZE: chaining mesh size, 3.12 good choice, should not be smaller
+# OPENING_ANGLE: tree code
+# EDGE: ???
+# alpha, power of scale factor in timestepping
+# TOPOLOGY: allows user to pick 3d decomposition (=ranks), if commented out, 
+#           machine will pick it for you
+# BIGCHUNK: memory management, percent extra to allocate in bigchunk
+# USE_ALLV: important for N-to-N write, will not work on Mira at scale
+################################################################################
+CM_SIZE 4.0	
+OPENING_ANGLE 0.1
+EDGE 3.2
+ALPHA 1.0
+#TOPOLOGY 4x4x2
+USE_BIGCHUNK NO
+BIGCHUNK_EXTRA_FACTOR 120
+MEMORY_PADDING_DISPLACEMENT 5.0
+USE_MONOPOLE_RCB_TREE YES
+USE_CHAINING_MESH YES
+#CHAINING_MESH_THREADS 28
+CHAINING_MESH_THREADS 8
+KERNEL_THREADS 1
+CHAINING_MESH_PER_SUBCYCLE YES
+RCB_TREE_EXTRA_LEVELS 5
+USE_ALLTOALLV YES
+USE_POLY YES
+
+################################################################################
+# Analysis
+# Config file for analysis
+################################################################################
+#COSMOTOOLS ON
+#COSMOTOOLS_CONFIG cosmotools-config.dat
+