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{2023.06}[2021b] FFTW v3.3.10 #297

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@laraPPr laraPPr commented Jul 5, 2023

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Instance eessi-bot-citc-aws is configured to build:

  • arch x86_64/generic for repo eessi-2021.12
  • arch x86_64/generic for repo eessi-2023.06-compat
  • arch x86_64/generic for repo eessi-2023.06-software
  • arch x86_64/intel/haswell for repo eessi-2021.12
  • arch x86_64/intel/haswell for repo eessi-2023.06-compat
  • arch x86_64/intel/haswell for repo eessi-2023.06-software
  • arch x86_64/intel/skylake_avx512 for repo eessi-2021.12
  • arch x86_64/intel/skylake_avx512 for repo eessi-2023.06-compat
  • arch x86_64/intel/skylake_avx512 for repo eessi-2023.06-software
  • arch x86_64/amd/zen2 for repo eessi-2021.12
  • arch x86_64/amd/zen2 for repo eessi-2023.06-compat
  • arch x86_64/amd/zen2 for repo eessi-2023.06-software
  • arch x86_64/amd/zen3 for repo eessi-2021.12
  • arch x86_64/amd/zen3 for repo eessi-2023.06-compat
  • arch x86_64/amd/zen3 for repo eessi-2023.06-software
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  • arch aarch64/generic for repo eessi-2023.06-software
  • arch aarch64/neoverse_n1 for repo eessi-2021.12
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  • arch aarch64/neoverse_n1 for repo eessi-2023.06-software
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laraPPr commented Jul 5, 2023

bot: build repo:eessi-2023.06-software

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New job on instance eessi-bot-citc-aws for architecture x86_64-generic for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_297/5750

date job status comment
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Jul 05 12:23:48 UTC 2023 released job awaits launch by Slurm scheduler
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✅ job output file slurm-5750.out
✅ no message matching ERROR:
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✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-generic-1688563824.tar.gzsize: 6 MiB (7143844 bytes)
entries: 139
modules under 2023.06/software/linux/x86_64/generic/modules/all
FFTW/3.3.10-gompi-2021b.lua
software under 2023.06/software/linux/x86_64/generic/software
FFTW/3.3.10-gompi-2021b
other under 2023.06/software/linux/x86_64/generic
.lmod/cache/spiderT.lua
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New job on instance eessi-bot-citc-aws for architecture x86_64-intel-haswell for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_297/5751

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✅ job output file slurm-5751.out
✅ no message matching ERROR:
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✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
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eessi-2023.06-software-linux-x86_64-intel-haswell-1688562792.tar.gzsize: 9 MiB (9893709 bytes)
entries: 139
modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all
FFTW/3.3.10-gompi-2021b.lua
software under 2023.06/software/linux/x86_64/intel/haswell/software
FFTW/3.3.10-gompi-2021b
other under 2023.06/software/linux/x86_64/intel/haswell
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New job on instance eessi-bot-citc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_297/5752

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Jul 05 12:23:43 UTC 2023 released job awaits launch by Slurm scheduler
Jul 05 12:28:19 UTC 2023 running job 5752 is running
Jul 05 13:02:15 UTC 2023 finished
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✅ job output file slurm-5752.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1688562112.tar.gzsize: 9 MiB (9648154 bytes)
entries: 139
modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all
FFTW/3.3.10-gompi-2021b.lua
software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software
FFTW/3.3.10-gompi-2021b
other under 2023.06/software/linux/x86_64/intel/skylake_avx512
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New job on instance eessi-bot-citc-aws for architecture x86_64-amd-zen2 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_297/5753

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✅ job output file slurm-5753.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen2-1688562415.tar.gzsize: 9 MiB (9669433 bytes)
entries: 139
modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all
FFTW/3.3.10-gompi-2021b.lua
software under 2023.06/software/linux/x86_64/amd/zen2/software
FFTW/3.3.10-gompi-2021b
other under 2023.06/software/linux/x86_64/amd/zen2
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✅ job output file slurm-5754.out
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✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
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eessi-2023.06-software-linux-x86_64-amd-zen3-1688562253.tar.gzsize: 9 MiB (9668480 bytes)
entries: 139
modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all
FFTW/3.3.10-gompi-2021b.lua
software under 2023.06/software/linux/x86_64/amd/zen3/software
FFTW/3.3.10-gompi-2021b
other under 2023.06/software/linux/x86_64/amd/zen3
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.lmod/cache/timestamp

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✅ job output file slurm-5755.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
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eessi-2023.06-software-linux-aarch64-generic-1688562464.tar.gzsize: 6 MiB (6481280 bytes)
entries: 119
modules under 2023.06/software/linux/aarch64/generic/modules/all
FFTW/3.3.10-gompi-2021b.lua
software under 2023.06/software/linux/aarch64/generic/software
FFTW/3.3.10-gompi-2021b
other under 2023.06/software/linux/aarch64/generic
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New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_n1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_297/5756

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✅ job output file slurm-5756.out
✅ no message matching ERROR:
✅ no message matching FAILED:
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✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_n1-1688562489.tar.gzsize: 6 MiB (6380014 bytes)
entries: 119
modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all
FFTW/3.3.10-gompi-2021b.lua
software under 2023.06/software/linux/aarch64/neoverse_n1/software
FFTW/3.3.10-gompi-2021b
other under 2023.06/software/linux/aarch64/neoverse_n1
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.lmod/cache/timestamp

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New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_v1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_297/5757

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✅ job output file slurm-5757.out
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❌ found message matching FAILED:
❌ found message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_v1-1688560947.tar.gzsize: 0 MiB (60378 bytes)
entries: 3
modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all
no module files in tarball
software under 2023.06/software/linux/aarch64/neoverse_v1/software
no software packages in tarball
other under 2023.06/software/linux/aarch64/neoverse_v1
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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boegel commented Jul 5, 2023

Installation for aarch64-neoverse_v1 failed in test step:

== testing...
  >> running command:
	[started at: 2023-07-05 12:40:59]
	[working dir: /tmp/bot/easybuild/build/FFTW/3.3.10/gompi-2021b/fftw-3.3.10]
	[output logged in /tmp/eb-w27hawxe/eb-4xka33wh/eb-kx5jstfc/eb-uiwzeu3g/eb-qbfn3o2c/eb-k5wt1gpn/eb-hmt8g6_7/eb-u6gpqr89/eb-y9d8qwo2/easybuild-run_cmd-8asnqcgm.log]
	export OMPI_MCA_rmaps_base_oversubscribe=true &&   make check
  >> command completed: exit 2, ran in 00h01m04s
== ... (took 1 min 4 secs)
== FAILED: Installation ended unsuccessfully (build directory: /tmp/bot/easybuild/build/FFTW/3.3.10/gompi-2021b): build failed (first 300 chars): cmd " export OMPI_MCA_rmaps_base_oversubscribe=true &&   make check " exited with exit code 2 and output:
Making check in support
make[1]: Entering directory '/tmp/bot/easybuild/build/FFTW/3.3.10/gompi-2021b/fftw-3.3.10/support'
make[1]: Nothing to be done for 'check'.
make[1]: Leaving directory '/t (took 6 mins 41 secs)

The actual problem here isn't shown, unclear which test fails, we need to make sure the EasyBuild log is retained for closer inspection...

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laraPPr commented Jul 5, 2023

bot: build repo:eessi-2023.06-software arch:aarch64/neoverse_v1

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Updates by the bot instance eessi-bot-citc-aws (click for details)
  • received bot command build repo:eessi-2023.06-software arch:aarch64/neoverse_v1 from laraPPr

    • expanded format: build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1
  • handling command build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

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New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_v1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_297/5758

date job status comment
Jul 05 14:54:03 UTC 2023 submitted job id 5758 awaits release by job manager
Jul 05 14:54:44 UTC 2023 released job awaits launch by Slurm scheduler
Jul 05 14:57:47 UTC 2023 running job 5758 is running
Jul 06 07:55:47 UTC 2023 finished
🤷 UNKNOWN (click triangle for detailed information)
  • Job results file _bot_job5758.result does not exist in job directory or reading it failed.
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@laraPPr
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laraPPr commented Jul 6, 2023

bot: build repo:eessi-2023.06-software arch:aarch64/neoverse_v1

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Updates by the bot instance eessi-bot-citc-aws (click for details)
  • received bot command build repo:eessi-2023.06-software arch:aarch64/neoverse_v1 from laraPPr

    • expanded format: build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1
  • handling command build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

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New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_v1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_297/5771

date job status comment
Jul 06 08:41:03 UTC 2023 submitted job id 5771 awaits release by job manager
Jul 06 08:41:15 UTC 2023 released job awaits launch by Slurm scheduler
Jul 06 08:44:22 UTC 2023 running job 5771 is running
Jul 06 08:54:44 UTC 2023 finished
😢 FAILURE (click triangle for details)
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✅ job output file slurm-5771.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_v1-1688633662.tar.gzsize: 0 MiB (71850 bytes)
entries: 3
modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all
no module files in tarball
software under 2023.06/software/linux/aarch64/neoverse_v1/software
no software packages in tarball
other under 2023.06/software/linux/aarch64/neoverse_v1
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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boegel commented Jul 7, 2023

It looks like the trouble we've been running into here on aarch64-neoverse_v1 doesn't happen consistently, since FFTW/3.3.10-gompi-2021b was built without problems in #289 ...

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boegel commented Jul 7, 2023

More info on the failing test for FFTW/3.3.10-gompi-2021b on aarch64-neoverse_v1:

...
--------------------------------------------------------------
      MPI FFTW transforms passed 10 tests, 2 CPUs
--------------------------------------------------------------
perl -w ../tests/check.pl --verbose --random --maxsize=10000 -c=10  --mpi "mpirun -np 3 `pwd`/mpi-bench"
Executing "mpirun -np 3 /tmp/bot/easybuild/build/FFTW/3.3.10/gompi-2021b/fftw-3.3.10/mpi/mpi-bench --verbose=1   --verify 'obr[8x11v5' --verify 'ibr[8x11v5' --verify 'obc[8x11v5' --verify 'ibc[8x11v5' --verify 'ofc[8x11v5' --verify 'ifc[8x11v5' --verify 'obrd[10x9' --verify 'ibrd[10x9' --verify 'obcd[10x9' --verify 'ibcd[10x9' --verify 'ofcd[10x9' --verify 'ifcd[10x9' --verify 'ok]10hx10o01x13o01' --verify 'ik]10hx10o01x13o01' --verify 'obcd35' --verify 'ibcd35' --verify 'ofcd35' --verify 'ifcd35' --verify 'ok3o00x12o11x14o01x5e10' --verify 'ik3o00x12o11x14o01x5e10' --verify 'obr[5x6x2x10v3' --verify 'ibr[5x6x2x10v3' --verify 'obc[5x6x2x10v3' --verify 'ibc[5x6x2x10v3' --verify 'ofc[5x6x2x10v3' --verify 'ifc[5x6x2x10v3' --verify 'ok7e00x12e01x8e10v7' --verify 'ik7e00x12e01x8e10v7' --verify 'obrd7x13' --verify 'ibrd7x13' --verify 'ofrd7x13' --verify 'ifrd7x13' --verify 'obcd7x13' --verify 'ibcd7x13' --verify 'ofcd7x13' --verify 'ifcd7x13' --verify 'obr[8x7v17' --verify 'ibr[8x7v17' --verify 'obc[8x7v17' --verify 'ibc[8x7v17' --verify 'ofc[8x7v17' --verify 'ifc[8x7v17' --verify 'ok3o01x11e00x7e01x6e00' --verify 'ik3o01x11e00x7e01x6e00'"
obr[8x11v5 3.04679e-16 3.40848e-16 2.72795e-16
ibr[8x11v5 3.09102e-16 5.68081e-16 3.287e-16
obc[8x11v5 2.99201e-16 4.54465e-16 5.23099e-16
ibc[8x11v5 3.33118e-16 3.40848e-16 4.53802e-16
ofc[8x11v5 3.53326e-16 3.40848e-16 5.857e-16
ifc[8x11v5 3.83947e-16 5.68081e-16 5.44608e-16
obrd[10x9 2.82987e-16 5.61733e-16 3.42072e-16
ibrd[10x9 3.31574e-16 7.48978e-16 3.74729e-16
obcd[10x9 2.72087e-16 3.74489e-16 5.19925e-16
ibcd[10x9 2.67526e-16 3.74489e-16 6.12669e-16
ofcd[10x9 3.21627e-16 3.74489e-16 5.2687e-16
ifcd[10x9 2.78883e-16 5.61733e-16 5.97321e-16
ok]10hx10o01x13o01 4.16996e-16 6.29475e-15 4.66257e-16
ik]10hx10o01x13o01 4.10441e-16 8.71148e-15 4.30452e-16
obcd35 3.36549e-16 4.50389e-16 4.51235e-16
ibcd35 3.05726e-16 4.50389e-16 3.66839e-16
ofcd35 2.72084e-16 4.50389e-16 3.73605e-16
ifcd35 2.93105e-16 4.50389e-16 5.36327e-16
ok3o00x12o11x14o01x5e10 3.86285e-16 8.64926e-15 4.92189e-16
ik3o00x12o11x14o01x5e10 4.27231e-16 6.67589e-15 4.65841e-16
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD
with errorcode 1.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
FAILED mpirun -np 3 /tmp/bot/easybuild/build/FFTW/3.3.10/gompi-2021b/fftw-3.3.10/mpi/mpi-bench:  --verify 'obr[8x11v5' --verify 'ibr[8x11v5' --verify 'obc[8x11v5' --verify 'ibc[8x11v5' --verify 'ofc[8x11v5' --verify 'ifc[8x11v5' --verify 'obrd[10x9' --verify 'ibrd[10x9' --verify 'obcd[10x9' --verify 'ibcd[10x9' --verify 'ofcd[10x9' --verify 'ifcd[10x9' --verify 'ok]10hx10o01x13o01' --verify 'ik]10hx10o01x13o01' --verify 'obcd35' --verify 'ibcd35' --verify 'ofcd35' --verify 'ifcd35' --verify 'ok3o00x12o11x14o01x5e10' --verify 'ik3o00x12o11x14o01x5e10' --verify 'obr[5x6x2x10v3' --verify 'ibr[5x6x2x10v3' --verify 'obc[5x6x2x10v3' --verify 'ibc[5x6x2x10v3' --verify 'ofc[5x6x2x10v3' --verify 'ifc[5x6x2x10v3' --verify 'ok7e00x12e01x8e10v7' --verify 'ik7e00x12e01x8e10v7' --verify 'obrd7x13' --verify 'ibrd7x13' --verify 'ofrd7x13' --verify 'ifrd7x13' --verify 'obcd7x13' --verify 'ibcd7x13' --verify 'ofcd7x13' --verify 'ifcd7x13' --verify 'obr[8x7v17' --verify 'ibr[8x7v17' --verify 'obc[8x7v17' --verify 'ibc[8x7v17' --verify 'ofc[8x7v17' --verify 'ifc[8x7v17' --verify 'ok3o01x11e00x7e01x6e00' --verify 'ik3o01x11e00x7e01x6e00'
make[3]: *** [Makefile:1001: check-local] Error 1
make[3]: Leaving directory '/tmp/bot/easybuild/build/FFTW/3.3.10/gompi-2021b/fftw-3.3.10/mpi'
make[2]: *** [Makefile:786: check-am] Error 2
make[2]: Leaving directory '/tmp/bot/easybuild/build/FFTW/3.3.10/gompi-2021b/fftw-3.3.10/mpi'
make[1]: *** [Makefile:788: check] Error 2
make[1]: Leaving directory '/tmp/bot/easybuild/build/FFTW/3.3.10/gompi-2021b/fftw-3.3.10/mpi'
make: *** [Makefile:710: check-recursive] Error 1
 (at easybuild/tools/run.py:643 in parse_cmd_output)

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boegel commented Jul 7, 2023

I'll re-trigger CI for this PR in a bit, since tarballs that include FFTW/3.3.10-gompi-2021b have been deployed via #289, and then close it since I don't see a need for explicitly listing FFTW/3.3.10-gompi-2021b in the easystack file (it's part of foss/2021b that was included in #289)

@laraPPr laraPPr closed this Jul 7, 2023
@laraPPr laraPPr deleted the FFTW_gompi_2021b branch July 7, 2023 12:28
@boegel boegel mentioned this pull request Aug 4, 2023
@boegel boegel mentioned this pull request Aug 30, 2023
trz42 pushed a commit to TopRichard/bot-software-layer1 that referenced this pull request Apr 5, 2024
add `pre_test` hook for dealing with failing Highway tests
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