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@ENCODE-DCC

ENCODE DCC

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  1. encoded encoded Public

    Metadata database for ENCODE project

    JavaScript 109 51

  2. snovault snovault Public

    The SnoVault general purpose hybrid object-relational database

    Python 15 8

  3. checkfiles checkfiles Public

    Files are checked to see if the MD5 sum (both for gzipped and ungzipped) is identical to the submitted metadata, as well as run through the validateFiles program from jksrc.

    Python 1

  4. pyencoded-tools pyencoded-tools Public

    Jupyter Notebook 8 12

  5. WranglerScripts WranglerScripts Public

    Collection of scripts used by the wranglers to interact with the servers

    Python 4 4

Repositories

Showing 10 of 123 repositories
  • genomic-data-service Public

    Flask based web service providing genomic region search, based on regulomedb.org

    ENCODE-DCC/genomic-data-service’s past year of commit activity
    Python 4 MIT 2 1 0 Updated Jul 1, 2024
  • encoded Public

    Metadata database for ENCODE project

    ENCODE-DCC/encoded’s past year of commit activity
    JavaScript 109 MIT 51 4 51 Updated Jun 26, 2024
  • geo-submission Public
    ENCODE-DCC/geo-submission’s past year of commit activity
    Python 3 MIT 2 0 1 Updated May 16, 2024
  • snovault Public

    The SnoVault general purpose hybrid object-relational database

    ENCODE-DCC/snovault’s past year of commit activity
    Python 15 MIT 8 2 28 Updated Mar 7, 2024
  • chip-seq-pipeline2 Public

    ENCODE ChIP-seq pipeline

    ENCODE-DCC/chip-seq-pipeline2’s past year of commit activity
    Python 234 MIT 123 48 0 Updated Feb 15, 2024
  • atac-seq-pipeline Public

    ENCODE ATAC-seq pipeline

    ENCODE-DCC/atac-seq-pipeline’s past year of commit activity
    Python 372 MIT 168 79 1 Updated Feb 15, 2024
  • hic-pipeline Public

    HiC uniform processing pipeline

    ENCODE-DCC/hic-pipeline’s past year of commit activity
    WDL 53 MIT 23 5 2 Updated Nov 8, 2023
  • coalesce_s3_log_glue_spark Public

    Glue pyspark job to combine s3 access logs to parquet

    ENCODE-DCC/coalesce_s3_log_glue_spark’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 19, 2023
  • valis-hpgv Public Forked from VALIS-software/valis-hpgv

    High performance WebGL genome visualization

    ENCODE-DCC/valis-hpgv’s past year of commit activity
    TypeScript 4 BSD-3-Clause 5 2 4 Updated Oct 17, 2023
  • filemetadata_dynamoDB Public

    Load selected encode file metadata to dynamoDB

    ENCODE-DCC/filemetadata_dynamoDB’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 28, 2023
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