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Finished parsing without consuming all tokens #415

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LI-Qinyao opened this issue May 9, 2023 · 1 comment
Open

Finished parsing without consuming all tokens #415

LI-Qinyao opened this issue May 9, 2023 · 1 comment

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@LI-Qinyao
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Would you please tell me what's wrong>
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@leepc12
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leepc12 commented May 16, 2023

Please find womtool-XX.jar in the config file and try to run it separately.

$ cat ~/.caper/default.conf
backend=local

# Local directory for localized files and Cromwell's intermediate files.
# If not defined then Caper will make .caper_tmp/ on CWD or `local-out-dir`.
# /tmp is not recommended since Caper store localized data files here.
local-out-dir=/home/leepc12/caper_out
local-loc-dir=/home/leepc12/caper_tmp


cromwell=/home/leepc12/.caper/cromwell_jar/cromwell-82.jar
womtool=/home/leepc12/.caper/womtool_jar/womtool-82.jar

Run it with your atac.wdl.

$ java -jar /home/leepc12/.caper/womtool_jar/womtool-82.jar validate atac.wdl
Success!

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