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Pipeline stuck #442

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JaskaranNeuro opened this issue Jul 5, 2024 · 0 comments
Open

Pipeline stuck #442

JaskaranNeuro opened this issue Jul 5, 2024 · 0 comments

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@JaskaranNeuro
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Hello,
Hope you are doing well
First of thanks for developing a useful pipeline for the analysis of ATAC seq data.
I am facing similar issues that was perivously repoted in the issue #280 , which did not went well using the your_backend_file_to_override_on_sync.conf.
At first, I was having a similar kind of error as @Kyung-TaeLee in issue #280 :
Screenshot from 2024-07-04 15-56-14
When I tried the solution of @leepc12 (both methods), and entered the command caper run atac.wdl -i "ATAC_seq_for_TLR3.json" --conda --max-concurrent-tasks 1 --backend-file your_backend_file_to_override_on_sync.conf, The following error is now being retrieved:
Screenshot from 2024-07-04 16-00-27
The cromwell.out file:
cromwell.out.txt
I`ll really appreciate any advice on that.
Thankyou

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