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no motif output #296

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jamesaliba opened this issue May 20, 2023 · 0 comments

jamesaliba commented May 20, 2023

1-Im using the hg38 from your link:
bash scripts/download_genome_data.sh hg38

My input BAM files are have names like chr1 chrX chr1_KI270706v1_random
as far as i know they resemble the downloaded hg38

The pipeline says if a genome is downloaded and have similar chromosome names as the bams, motif analysis is automatic.

2-macs peaks were called, i thought the default for tf was spp? i do have input controls

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